View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_19 (Length: 309)
Name: NF20187_low_19
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 32099342 - 32099066
Alignment:
| Q |
18 |
agttgtatcaaatcaagaatgacaaattttgttgaaacattctacaaagacagaaagtttcccttcattttcaccctctttgccttgcttatttgtgtca |
117 |
Q |
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| T |
32099342 |
agttgtatcaaatcaagaatgacaaattttgttgaaacattctacaaagacagaaagtttccattcattttcaccctctttgccttgcttatttgtgtca |
32099243 |
T |
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| Q |
118 |
caatcatcctctttgccaacaccaccatcaacttcaccgcctctaatccaattgccttctaccccgacaacgtaaaagtgcagcaaccattcaatcacca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32099242 |
caatcatcctctttgccaacaccaccatcaacttcaccgcctctaatccaattgccttctaccccgacaacgtaaaagtgcagcaaccattcaatcacca |
32099143 |
T |
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| Q |
218 |
tgatcctccagtactcacatattcaaaagatcatcaagaacaaccactagaccacgatgcgcctccagtactcacag |
294 |
Q |
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| T |
32099142 |
tgatcctccagcactcacagattcaaaagatcatcaagaacaaccactagaccacgatgcgcctccagtactcacag |
32099066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 32099081 - 32099009
Alignment:
| Q |
222 |
cctccagtactcacatattcaaaagatcatcaagaacaaccactagaccacgatgcgcctccagtactcacag |
294 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
32099081 |
cctccagtactcacagattcaaaagatcatcaagaagaaccactacaccacgatgcgcctccagtacttacag |
32099009 |
T |
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