View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_2 (Length: 601)
Name: NF20187_low_2
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Complemental strand, 1764892 - 1764408
Alignment:
| Q |
15 |
cataggtggtttagagtcttttgtttttacaaaagccctgnnnnnnnnnnnnnnnncgacttccaacttttatgctttgcggaaattgatgatattctgg |
114 |
Q |
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| T |
1764892 |
cataggtggtttagagtcttttgtttttacaaaagccctgaaaaaaaaaaaaa---cgacttccaacttttatgctttgcggaaattaatgatattctgg |
1764796 |
T |
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| Q |
115 |
tcatgaaatattacataatattgtgaggttaaaacatatcttcatctgttttttatgctcgaataagcttcattttatttaatttgtgaatattactaca |
214 |
Q |
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| T |
1764795 |
tcatgaaatattacataatattgtgaggttaaaacatatcttcatctgttttttatgctcgaataagcttcattttatttaatttgtgaatattactaca |
1764696 |
T |
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| Q |
215 |
gataacatgacaggttgtaaatattaaggttgagttagatttctattgatgaaaaaattggtggtgcgcagggtgttcaattaagttttaagatataaga |
314 |
Q |
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| T |
1764695 |
gataacatgacaggttgtaaatattaaggttgagttagatttctattgatgaaaaaattggtggtgcgcagggtgttcaattaagttttaagatataaga |
1764596 |
T |
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| Q |
315 |
tataaagtttgattttgattgataaaagaaaagcaacannnnnnngaaggaaaaagaaaagtaacatggtcagtggaatttccaagtgacagggtctgtc |
414 |
Q |
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| T |
1764595 |
tataaagtttgattttgattgataaaagaaaagtaacatttttttgaaggaaaaagaaaagtaacatggtcagtgaaatttccaagtgacaaggtctgtc |
1764496 |
T |
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| Q |
415 |
gaatttccccattgtcttcttacttatgatgtggtttgacttcattttgggttctaacttcgcccaaacaattgtgcatataattatg |
502 |
Q |
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| T |
1764495 |
gaatttccccattgtcttcttacttatgatgtggtttgacttcattttgggttctaacttcgcccaaacaattgtgcatataattatg |
1764408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 494 - 583
Target Start/End: Complemental strand, 1764223 - 1764134
Alignment:
| Q |
494 |
ataattatgtcaacggtattttgtgttgcagttgcaaaacgagtctctaaaagcaagcattgcgagtttcgagcatgatgatgtatttca |
583 |
Q |
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| T |
1764223 |
ataattatgtcaacggtattttgtattgcagttgcaaaacgagtctctaaaagcaagcattgcgagtttcgagcatgatgatgtatttca |
1764134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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