View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_25 (Length: 282)
Name: NF20187_low_25
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 19643356 - 19643106
Alignment:
| Q |
16 |
gcagttgcgaagaagcgtgcaaatagcatatttggatcaacatatatagcttcacaacatgtagatcatgaagaagaaagcaaggatgaaacagaagtat |
115 |
Q |
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| T |
19643356 |
gcagttgcgaagaagcgtgcaaatagcatatttggatcaacatatgtagcttcacaacatggagatcatgaagaagaaagcaaggatgaaacagaagtat |
19643257 |
T |
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| Q |
116 |
accatgcagagagggttctacctaatggagattactacaaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatg |
215 |
Q |
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| T |
19643256 |
accatgcagagagggttctacccaatggagattactataaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatg |
19643157 |
T |
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| Q |
216 |
tatatatgttggagaatggttcaaaggaaaaactatgggaaagggaaggtt |
266 |
Q |
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| T |
19643156 |
tatatatgttggagaatggttcaaaggaaaaactatgggaaagggaaggtt |
19643106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 257
Target Start/End: Original strand, 35256503 - 35256621
Alignment:
| Q |
139 |
aatggagattactacaaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatgtatatatgttggagaatggttca |
238 |
Q |
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| T |
35256503 |
aatggtgattactatacaggacaatgggcagaaaattttccacatggagaaggaaaatatctatggacggatgggtgcatgtacgttggacaatggttca |
35256602 |
T |
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| Q |
239 |
aaggaaaaactatgggaaa |
257 |
Q |
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| T |
35256603 |
aaggaaaaacaaagggaaa |
35256621 |
T |
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