View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20187_low_27 (Length: 271)

Name: NF20187_low_27
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20187_low_27
NF20187_low_27
[»] chr3 (6 HSPs)
chr3 (1-257)||(45909973-45910212)
chr3 (130-242)||(20993581-20993693)
chr3 (107-182)||(45880802-45880877)
chr3 (107-182)||(45855761-45855836)
chr3 (130-243)||(20980437-20980550)
chr3 (104-143)||(2995315-2995354)
[»] chr5 (3 HSPs)
chr5 (45-201)||(7975730-7975886)
chr5 (108-166)||(38141044-38141102)
chr5 (114-166)||(7895931-7895983)
[»] chr7 (1 HSPs)
chr7 (116-257)||(44500129-44500270)
[»] chr4 (4 HSPs)
chr4 (114-201)||(36590331-36590418)
chr4 (215-256)||(20272818-20272859)
chr4 (114-184)||(20272898-20272970)
chr4 (76-166)||(3979507-3979597)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 45910212 - 45909973
Alignment:
Q  1 taatggaaccacttctgtataaaattcgcatggcactgtgtgaagtcaagttacagaaacttaagttaaagacaaaagctgctaagttacgaaaagattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||                 ||||||||||    
T  45910212 taatggaaccacttctgtataaaattcgcatggcactgtgtgaattcaagttacagaaagttaagtcaaagac-----------------gaaaagattt 45910130  T
Q  101 tgtagaaggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctca 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45910129 tgtagaaggattggaaccatcttcactcatacctgatggaatattggacttcttgcttcgaaattcgccatcagcagaagttgatttcgtagattgctca 45910030  T
Q  201 acgcaaactcttaaagcaagagatttataattggtttgtttttcgtttccttctctg 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45910029 acgcaaactcttaaagcaagagatttataattggtttgtttttcgtttccttctctg 45909973  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 20993693 - 20993581
Alignment:
Q  130 tacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttata 229  Q
    |||||||||| |||  ||||||||||| |||||||||||| || ||||||||||| |||||||||||| |||   || || ||| | ||||| |||||||    
T  20993693 tacctgatgggatagtggacttcttgcgtcaaaattcgccctcggcagaagttgacttcgtagattgcacaagaaaacctgttagaccaagacatttata 20993594  T
Q  230 attggtttgtttt 242  Q
    |||||||||||||    
T  20993593 attggtttgtttt 20993581  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 45880877 - 45880802
Alignment:
Q  107 aggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagtt 182  Q
    |||||| ||||||||| ||| ||||||||||||||||    ||||||||||||||||||||||||| ||| |||||    
T  45880877 aggattggaaccatctgcacccatacctgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt 45880802  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 45855836 - 45855761
Alignment:
Q  107 aggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagtt 182  Q
    |||||| ||||||||| ||| |||||| |||||||||    ||||||||||||||||||||||||| ||| |||||    
T  45855836 aggattggaaccatctgcacccatacccgatggaataattaacttcttgcttcaaaattcgccatcggcacaagtt 45855761  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 20980550 - 20980437
Alignment:
Q  130 tacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaagcaagagatttata 229  Q
    |||||||||| |||  ||||||||||| ||||||||||||  ||||| ||||||| ||| |||||||| |||   || || ||| | ||| | |||||||    
T  20980550 tacctgatgggatagtggacttcttgcgtcaaaattcgcccacagcaaaagttgacttcatagattgcacaaaaaaatctgttagaccaaaacatttata 20980451  T
Q  230 attggtttgttttt 243  Q
    |||||||| |||||    
T  20980450 attggtttattttt 20980437  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 2995354 - 2995315
Alignment:
Q  104 agaaggatttgaaccatcttcactcatacctgatggaata 143  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  2995354 agaaggattggaaccattttcactcatacctgatggaata 2995315  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 7975886 - 7975730
Alignment:
Q  45 gtcaagttacagaaacttaagttaaagacaaaagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatat 144  Q
    |||| |||||||||| | |||| ||||| | |||||||||||||||||||||  |||  ||| |||||  |||||||||||||||||||||||||||||     
T  7975886 gtcatgttacagaaaatcaagtcaaagaaagaagctgctaagttacgaaaagcatttagagatggattgaaaccatcttcactcatacctgatggaatag 7975787  T
Q  145 aggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaa 201  Q
     ||||||||||||||||||||| || || ||| ||||||| | | |||||| |||||    
T  7975786 tggacttcttgcttcaaaattcaccttcggcaaaagttgactacatagatttctcaa 7975730  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 38141102 - 38141044
Alignment:
Q  108 ggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 166  Q
    ||||| ||||||||| ||| ||||||||||||||||  |||||||||| ||||||||||    
T  38141102 ggattggaaccatctgcacccatacctgatggaatagtggacttcttgattcaaaattc 38141044  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 7895931 - 7895983
Alignment:
Q  114 gaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 166  Q
    ||||||||| ||| ||||||||||||||||  ||| |||||||||||||||||    
T  7895931 gaaccatctgcacccatacctgatggaatagtggatttcttgcttcaaaattc 7895983  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 257
Target Start/End: Complemental strand, 44500270 - 44500129
Alignment:
Q  116 accatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaacgcaaactcttaaa 215  Q
    |||||||||||   |||||||| |||||  ||||||||||||||||||||| ||||  ||||||||||| ||| | ||| |||||| || | ||||| ||    
T  44500270 accatcttcacctgtacctgatagaatagtggacttcttgcttcaaaattcaccattggcagaagttgacttcatcgatcgctcaaggcgacctctttaa 44500171  T
Q  216 gcaagagatttataattggtttgtttttcgtttccttctctg 257  Q
    |  ||| ||||||||| ||||||||| | ||| |||||||||    
T  44500170 gagagatatttataatcggtttgtttcttgttcccttctctg 44500129  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 36590418 - 36590331
Alignment:
Q  114 gaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattcgccatcagcagaagttgatttcgtagattgctcaa 201  Q
    ||||||||||||| ||||||||||||||||  |||||| ||| ||||||| || || ||||||||||||||  || ||||| ||||||    
T  36590418 gaaccatcttcacccatacctgatggaatagtggactttttgattcaaaactcaccgtcagcagaagttgacatcatagatagctcaa 36590331  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 20272859 - 20272818
Alignment:
Q  215 agcaagagatttataattggtttgtttttcgtttccttctct 256  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  20272859 agcaaaagatttataattggtttgttttttgtttccttctct 20272818  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 20272970 - 20272898
Alignment:
Q  114 gaaccatcttcactcatacctgatggaatata--ggacttcttgcttcaaaattcgccatcagcagaagttga 184  Q
    |||||||||||| |||||||  |||||||||   |||||| ||||||||||||||||||||  ||||||||||    
T  20272970 gaaccatcttcagtcataccaaatggaatattatggactttttgcttcaaaattcgccatcgacagaagttga 20272898  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 3979507 - 3979597
Alignment:
Q  76 aagctgctaagttacgaaaagattttgtagaaggatttgaaccatcttcactcatacctgatggaatataggacttcttgcttcaaaattc 166  Q
    ||||||||| | |||||||||  |||  |||||| || |||||| |||||| | ||||||||||||||  ||||||||||  |||||||||    
T  3979507 aagctgctaggatacgaaaagcatttaaagaagggttggaaccaccttcacccgtacctgatggaatagtggacttcttgtgtcaaaattc 3979597  T

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