View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_29 (Length: 256)
Name: NF20187_low_29
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43322259 - 43322494
Alignment:
| Q |
1 |
tttaaattcttcttcatttcctaaactggctcctctatttggnnnnnnnnnnnnnnnnnaattttagaattatacattgaactgtcagaaaatggtggct |
100 |
Q |
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| T |
43322259 |
tttaaattcttcttcatttcctaaactggctcctctatttggtttttttgttttttt--aattttagaattatacattgaactgtcagaaaatggtggct |
43322356 |
T |
|
| Q |
101 |
tctgaatccatttctcaaactgtggcagtgattggtatggggcatttttctgcattaaaatgatttatgtgtaagnnnnnnnncagcatcataatatatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43322357 |
tctgaatccatttctcaaactgtggcagtgattggtatggggcatttttctgcattaaaatgatttatgtgtaag-aaaaaaacagcatcataatatatt |
43322455 |
T |
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| Q |
201 |
gatcttcgtattagtagcatttgacattgatcataatat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
43322456 |
gatcttcgtattagtagcatttgacattgatcataatat |
43322494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 43331319 - 43331492
Alignment:
| Q |
60 |
aattttagaattatacattgaactgtcagaaaatggtggcttctgaatccatttctcaaactgtggcagtgattggtatggggcatttttctgcattaaa |
159 |
Q |
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| T |
43331319 |
aattttagaattatacatggaattgtttgataatggtggctt---aatccattgctcgaattgagggagtgattgatatggggcatttttctgcattaaa |
43331415 |
T |
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| Q |
160 |
atgatttatgtgtaagnnnnnnnncagcatcataatatattgatcttcgtattagtagcatttgacattgatcataatat |
239 |
Q |
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| T |
43331416 |
atgatttataggtaagatatag---agcatcataatatattgatctccatgttagtggcatttcacatggaacataatat |
43331492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 43315973 - 43316152
Alignment:
| Q |
60 |
aattttagaattatacattgaactgtcagaaaatggtggcttctgaatccatttctcaaactgtggcagtgattggtatggggcatttttctgcattaaa |
159 |
Q |
| |
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|||||||||||||||||| ||| |||| || | ||| | ||||| |||||||| | || ||||||||||||||| |||||||||||||||||| || |
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| T |
43315973 |
aattttagaattatacatagaagtgtccgacattggcgccttcttaatccattcgttgaattgtggcagtgattggcgaggggcatttttctgcattgaa |
43316072 |
T |
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| Q |
160 |
atgatttatgtgtaagnnnnnnnncagcatcataatatattgatcttcgtattagtagcatttgacattgatcataatat |
239 |
Q |
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| T |
43316073 |
agaatttataggtaaagaaaaaaagagcatcataatatattgatcactgtgttagtagcatttcacattgatcataatat |
43316152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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