View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_3 (Length: 546)
Name: NF20187_low_3
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Original strand, 20255375 - 20255889
Alignment:
| Q |
18 |
gacattgagattcaaactcaaaattatttaaaaaataaactatatttttacatcaagtaaaccgatattcgttgaatgtattcacataaatttttcattt |
117 |
Q |
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| T |
20255375 |
gacattgagattcaaactcaaacttatttaaaaaataaactatatttttacatcaagtaaaccgatattcgttgaatgtattcacataaatttttcattt |
20255474 |
T |
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| Q |
118 |
gagtatgatgtatatactatactttgtgcattaaatgtatatctcaagtggattggtcaattaaccatagtatcctcatgggtggctaatcatatgataa |
217 |
Q |
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| T |
20255475 |
gagtatgatgtatatactatactttgtgcattaaatgtatatctcaagtggattggtcaattaaccatagtatcctcatgggtggctaatcatatgataa |
20255574 |
T |
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| Q |
218 |
tataacgtaatatagtagaaagtgacattgaagtcaaaatttgcatatgacatgggttgtggggcgtgtttcaagcctagagccatgtgtaaggtcactc |
317 |
Q |
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| T |
20255575 |
tataacgtaatatagtagaaagtgacattgaagtcaaaatttgcatatgacatgggttgtggggcgtgtttcaagcctagagccatgtgtaaggtcactc |
20255674 |
T |
|
| Q |
318 |
cggcacagctacttagatagcgagcctttcttttttcc----------ccttcattttattatcatatattttacttgaggtattgaatactccttttct |
407 |
Q |
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| T |
20255675 |
cggcacaactacttagatagtgagcttttcttttttcctttttttttttcttcttcattttatcatatattttacttgaggtattgaatactccttttct |
20255774 |
T |
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| Q |
408 |
acttgttccatactctatacttgttgccattgttgagtgaaatagaagcatcaagtatgtcgtacactcaataaccttattgatttcatatcacacgact |
507 |
Q |
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| T |
20255775 |
acttgttccatactctatatttgttgccattgttgggtgaaatagaagcatcaa-------gtacactcaataaccttattgatttcatatcacacgact |
20255867 |
T |
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| Q |
508 |
tactgacttagagattacatat |
529 |
Q |
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|||||||||||||||||||||| |
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| T |
20255868 |
tactgacttagagattacatat |
20255889 |
T |
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