View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20187_low_36 (Length: 221)

Name: NF20187_low_36
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20187_low_36
NF20187_low_36
[»] chr8 (4 HSPs)
chr8 (1-221)||(27498888-27499108)
chr8 (1-221)||(27544260-27544480)
chr8 (1-221)||(27504807-27505027)
chr8 (42-221)||(27496631-27496810)
[»] chr3 (3 HSPs)
chr3 (1-221)||(11317339-11317559)
chr3 (3-221)||(15461126-15461344)
chr3 (17-221)||(11438920-11439124)
[»] scaffold0071 (1 HSPs)
scaffold0071 (3-221)||(848-1066)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27499108 - 27498888
Alignment:
Q  1 cttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  27499108 cttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtattaggatattggaaggaaaacttggaaaggccagagaaggtgat 27499009  T
Q  101 gtttttgaaatatgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaag 200  Q
    |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||    
T  27499008 gtttataaaatttgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgagtttctgggttgtccattctttaatgaagaagaatccaag 27498909  T
Q  201 ggcatggtcgatgatatatta 221  Q
    |||||| ||||||||||||||    
T  27498908 ggcatgatcgatgatatatta 27498888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27544260 - 27544480
Alignment:
Q  1 cttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgat 100  Q
    |||| ||||||||||||||||| | |||||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||    
T  27544260 ctttcgagagtttttgtagaggcgcgagttcttttggaccgttttgggagcatgtattgggatattggaaggaaagcttggaaaggccggagaaggtgat 27544359  T
Q  101 gtttttgaaatatgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaag 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||| || | ||||||||||| || ||||||||||||||     
T  27544360 gtttttgaaatatgaagaaatgaaaatgaatcctagtttttatttgaaagagattgctaattttttgggttgtccattctccaaagaagaagaatccaaa 27544459  T
Q  201 ggcatggtcgatgatatatta 221  Q
    || ||||| ||||||||||||    
T  27544460 ggtatggttgatgatatatta 27544480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27504807 - 27505027
Alignment:
Q  1 cttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgat 100  Q
    |||||||||||||||||||||||   | |||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||| || |||||||| ||    
T  27504807 cttttgagagtttttgtagaggaacaacttcttatggaccgttttgggatcatgtattaggatactggaaggaaagcttggaaagaccggagaaggttat 27504906  T
Q  101 gtttttgaaatatgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaag 200  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||| | ||| || | |||||||||||  | ||||||||||||||     
T  27504907 gtttttgaaatatgaagaaatgaaaatgaaacctaattttgttttgaaagagattgctaagtttttggggtgtccattctccgaagaagaagaatccaat 27505006  T
Q  201 ggcatggtcgatgatatatta 221  Q
    ||  |||| ||||||||||||    
T  27505007 ggtgtggttgatgatatatta 27505027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 27496810 - 27496631
Alignment:
Q  42 ttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaagaaatgaaaatgaaacctagttttt 141  Q
    ||||||||||||||| |||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  27496810 ttttgggagcatgtattaggatattgaacggaaagtttggaaatgccagagaaggtgatgtttttgaaatatgaagaagcgaaaatgaagcctagttttt 27496711  T
Q  142 atttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaagggcatggtcgatgatatatta 221  Q
    ||||||||||||||||||| ||| || | |||  ||| |||| ||||||||||||||| |||||||| |||||| |||||    
T  27496710 atttgaaaaagattgctgagtttttgggttgtggattttctattgaagaagaatccaacggcatggttgatgatttatta 27496631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11317559 - 11317339
Alignment:
Q  1 cttttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgat 100  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||    
T  11317559 cttttgagaatttttgtagaggagtgagttcttttggacccttttgggagcatgtattggtatattggaagaaaagcttggaaaggccagagaaggtgat 11317460  T
Q  101 gtttttgaaatatgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaag 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| ||| ||   ||||||||||| || |||||||||| |||     
T  11317459 gtttttgaaatatgaagaaatgaaaatgaaacctaatttttatttgaaagagcttgctgagtttttggagtgtccattctccaaagaagaagaattcaaa 11317360  T
Q  201 ggcatggtcgatgatatatta 221  Q
    ||  |||| ||||||||||||    
T  11317359 ggtgtggttgatgatatatta 11317339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 15461126 - 15461344
Alignment:
Q  3 tttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgatgt 102  Q
    |||||||  |||| |||||| |||||||  | ||||||||||||||| ||| || ||||||| ||||| |||||||||||||||| ||||||||||||||    
T  15461126 tttgagaaattttctagaggtgtgagtttgtttggacccttttgggaacatttattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgt 15461225  T
Q  103 ttttgaaatatgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaaggg 202  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||| || ||||||| ||| || | ||||||||||| || ||||||||||| || ||    
T  15461226 ttttgagatatgaagaaatgaaaatgaagccttgtttttatttgaaagaggttgctgagtttttggggtgtccattctccaaagaagaagaatctaaagg 15461325  T
Q  203 catggtcgatgatatatta 221  Q
      |||| ||||||||||||    
T  15461326 agtggttgatgatatatta 15461344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 11439124 - 11438920
Alignment:
Q  17 tagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgatgtttttgaaatatgaa 116  Q
    ||||||||||| ||  | |||||||||||||||||||||| |||| |||||||||||||| ||||||||  || | ||||| |||||||||| || ||||    
T  11439124 tagaggagtgactttgtttggacccttttgggagcatgtattaggttattggaaggaaagtttggaaagatcaaacaaggttatgtttttgagatttgaa 11439025  T
Q  117 gaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaagggcatggtcgatgata 216  Q
    |||||||||||||| |||  |||| ||||||||||| ||||||||||| ||   ||||| ||| |||| || |||||||| || ||  |||| |||||||    
T  11439024 gaaatgaaaatgaagcctgattttcatttgaaaaagcttgctgaatttttggagtgtcctttcactaaagatgaagaatctaaaggggtggttgatgata 11438925  T
Q  217 tatta 221  Q
    |||||    
T  11438924 tatta 11438920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 1066 - 848
Alignment:
Q  3 tttgagagtttttgtagaggagtgagttcttatggacccttttgggagcatgtaataggatattggaaggaaagcttggaaaggccagagaaggtgatgt 102  Q
    |||||||  |||| |||||| |||||||  | ||||||||||||||| ||| || ||||||| ||||| |||||||||||||||| ||||||||||||||    
T  1066 tttgagaaattttctagaggtgtgagtttgtttggacccttttgggaacatttattaggatactggaaagaaagcttggaaaggcaagagaaggtgatgt 967  T
Q  103 ttttgaaatatgaagaaatgaaaatgaaacctagtttttatttgaaaaagattgctgaatttctgagctgtccattctctaatgaagaagaatccaaggg 202  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||| || ||||||| ||| || | ||||||||||| || ||||||||||| || ||    
T  966 ttttgagatatgaagaaatgaaaatgaagccttgtttttatttgaaagaggttgctgagtttttggggtgtccattctccaaagaagaagaatctaaagg 867  T
Q  203 catggtcgatgatatatta 221  Q
      |||| ||||||||||||    
T  866 agtggttgatgatatatta 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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