View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20187_low_4 (Length: 534)

Name: NF20187_low_4
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20187_low_4
NF20187_low_4
[»] chr6 (7 HSPs)
chr6 (212-524)||(2557184-2557511)
chr6 (18-115)||(2557518-2557615)
chr6 (318-378)||(2615116-2615176)
chr6 (320-401)||(30323089-30323170)
chr6 (291-379)||(2616973-2617061)
chr6 (276-379)||(17515399-17515502)
chr6 (345-402)||(4844441-4844498)
[»] chr4 (15 HSPs)
chr4 (289-402)||(26740739-26740852)
chr4 (309-402)||(42674019-42674112)
chr4 (289-402)||(31216952-31217065)
chr4 (289-402)||(49250087-49250200)
chr4 (318-402)||(55322989-55323073)
chr4 (321-379)||(9319892-9319950)
chr4 (318-379)||(41236087-41236148)
chr4 (318-402)||(31204357-31204441)
chr4 (291-402)||(50328420-50328531)
chr4 (289-399)||(53133448-53133558)
chr4 (318-402)||(37056185-37056270)
chr4 (290-379)||(38354254-38354343)
chr4 (334-379)||(47388488-47388533)
chr4 (331-379)||(17340339-17340387)
chr4 (330-402)||(45219989-45220061)
[»] chr5 (13 HSPs)
chr5 (291-402)||(40298303-40298414)
chr5 (284-402)||(19961516-19961634)
chr5 (321-376)||(730796-730851)
chr5 (289-400)||(3938374-3938485)
chr5 (291-402)||(30685546-30685657)
chr5 (289-402)||(14575972-14576085)
chr5 (322-402)||(30721399-30721479)
chr5 (318-402)||(33208416-33208500)
chr5 (320-398)||(4746048-4746126)
chr5 (289-360)||(14622539-14622610)
chr5 (321-379)||(3257486-3257544)
chr5 (318-379)||(36527423-36527484)
chr5 (311-379)||(25983052-25983120)
[»] chr8 (6 HSPs)
chr8 (295-402)||(40740670-40740777)
chr8 (289-402)||(4993279-4993390)
chr8 (318-378)||(4989291-4989351)
chr8 (318-382)||(39108605-39108669)
chr8 (291-402)||(5957045-5957156)
chr8 (318-402)||(32062275-32062359)
[»] chr1 (10 HSPs)
chr1 (297-400)||(10881878-10881981)
chr1 (289-402)||(15279050-15279163)
chr1 (318-402)||(51295764-51295848)
chr1 (318-400)||(33828121-33828203)
chr1 (318-400)||(33839762-33839844)
chr1 (290-379)||(42549258-42549347)
chr1 (291-402)||(34710960-34711071)
chr1 (329-382)||(51050117-51050170)
chr1 (321-420)||(29587151-29587251)
chr1 (345-377)||(52124804-52124836)
[»] scaffold0004 (1 HSPs)
scaffold0004 (318-402)||(122488-122572)
[»] chr3 (11 HSPs)
chr3 (320-402)||(37700278-37700360)
chr3 (286-379)||(24657295-24657388)
chr3 (317-382)||(12931530-12931594)
chr3 (291-419)||(20378993-20379122)
chr3 (291-379)||(49447627-49447715)
chr3 (323-402)||(28392186-28392265)
chr3 (320-377)||(49230069-49230124)
chr3 (289-346)||(43176964-43177021)
chr3 (289-402)||(53287384-53287497)
chr3 (321-373)||(28554166-28554218)
chr3 (289-373)||(39990772-39990856)
[»] chr7 (10 HSPs)
chr7 (318-379)||(23358453-23358514)
chr7 (318-382)||(43251940-43252004)
chr7 (318-379)||(39983062-39983123)
chr7 (318-377)||(37828346-37828405)
chr7 (321-379)||(23363754-23363812)
chr7 (318-373)||(3398914-3398969)
chr7 (301-379)||(3767200-3767279)
chr7 (291-402)||(25971417-25971528)
chr7 (309-400)||(48633969-48634060)
chr7 (336-402)||(25594582-25594648)
[»] chr2 (5 HSPs)
chr2 (289-402)||(44966070-44966183)
chr2 (291-402)||(31663445-31663555)
chr2 (290-370)||(34242357-34242437)
chr2 (318-402)||(40711219-40711303)
chr2 (291-380)||(14839593-14839682)
[»] scaffold0047 (1 HSPs)
scaffold0047 (286-402)||(66112-66228)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 212 - 524
Target Start/End: Complemental strand, 2557511 - 2557184
Alignment:
Q  212 acaacatcttttatggcaagtatgagtacacatttcaatcgtgcttcttaccgaaaaatttgagtcttttattaaatggaaatgttaatttgtgctatta 311  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2557511 acaacaacttttatggcaggtatgagtacacatttcaatcgtgcttcttacttaaaaatttgagtcttttattaaagggaaatgttaatttgtgctatta 2557412  T
Q  312 agatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcacagcttttaga 411  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  2557411 agacataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaacttcttagtgatgtgaatgcacaacttttaga 2557312  T
Q  412 gaacatttannnnnnngggtt---------------tcaaatggcacaagttaaactatcctttattaaatatactttgacattagggctcaaaatgagt 496  Q
    |||||||||       |||||               || || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2557311 gaacatttatttttttgggtttcttaacatgtgtgctctaagggcacaagttaaactaccctttattaaatatactttgacgttagggctcaaaatgagt 2557212  T
Q  497 agagttgaatcaaactttcttcatctca 524  Q
    |||| |||||||||||||||||| ||||    
T  2557211 agagctgaatcaaactttcttcagctca 2557184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 2557615 - 2557518
Alignment:
Q  18 aaaaacgagtgcaaatcaagcttggattcgaaagaaaatgttattcttttgaataactccctacttacacacatgatccaacatattttagcaaattt 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2557615 aaaaacgagtgcaaatcaagcttggatacgaaagaaaatgttattcttttgaataacgccctacttacacacatgatccaacatattttagcaaattt 2557518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 2615116 - 2615176
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttta 378  Q
    |||||||||||||||||||||||||| || ||||||||||||| |||||||||||| ||||    
T  2615116 aagttaatgaatcaaatataaaaatagttcattagaatgtgtgcattatatttaattttta 2615176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 30323170 - 30323089
Alignment:
Q  320 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcac 401  Q
    ||||||| |||||||||| ||||| |||||| |||||| ||||||| ||||||||||||| || ||| ||| ||||||||||    
T  30323170 gttaatgcatcaaatatagaaatagtttattggaatgtatgtattacatttaatctttaactttttaatgaattgaatgcac 30323089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 2616973 - 2617061
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||| ||| ||||||| |||| | | |||||||||||||||||||||||||| |||||| | |||| || |||| |||||| ||||||    
T  2616973 aaatgctaacttgtgctcttaaaacacaagttaatgaatcaaatataaaaatagtttattgggatgtatgcattacatttaacctttaa 2617061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 17515502 - 17515399
Alignment:
Q  276 tcttttattaaatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatct 375  Q
    ||||||||| || ||||||||||| ||||||  | |||||| || ||||||| ||||||||  ||||| ||||||  ||| ||||||||  |||||||||    
T  17515502 tcttttatttaaaggaaatgttaacttgtgccctcaagatacaatttaatgattcaaatatgtaaataatttattgaaatatgtgtattgcatttaatct 17515403  T
Q  376 ttaa 379  Q
    ||||    
T  17515402 ttaa 17515399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 4844441 - 4844498
Alignment:
Q  345 tttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||| |||||||||||||||||||||| ||||| || ||| | | |||||||||||    
T  4844441 tttattggaatgtgtgtattatatttaatatttaactttttaataaattgaatgcaca 4844498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 26740739 - 26740852
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||| ||||||| |||||| | | |||||||||||||||||||||||| |||||| |||| ||||||||| || |||||||||| || ||| |    
T  26740739 ggaaatgttaacttgtgctcttaagacacacgttaatgaatcaaatataaaaatattttattggaatatgtgtattacatgtaatctttaactttttaat 26740838  T
Q  389 gatttgaatgcaca 402  Q
    || |||||||||||    
T  26740839 gaattgaatgcaca 26740852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 42674019 - 42674112
Alignment:
Q  309 ttaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||||| ||||||||||| |||||||||||||| || ||| |||||| || ||||||||||||||||||||| ||| ||| |||||||||||    
T  42674019 ttaagatacaagttaatgaaacaaatataaaaataattcattggaatgtatgcattatatttaatctttaattttttaatgagttgaatgcaca 42674112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 31217065 - 31216952
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||| ||| ||||||  |||||| | |||||||| ||||||||||| ||||  |||||| ||| |||||||||| ||||||||||||| || ||| |    
T  31217065 ggaaatgctaacttgtgcccttaagacacaagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaat 31216966  T
Q  389 gatttgaatgcaca 402  Q
    || |||||||||||    
T  31216965 gaattgaatgcaca 31216952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 49250200 - 49250087
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||| |||| |  ||||| || | ||||||  |||||||||||||||| ||||||  ||||| ||||||| ||||||||||||| || ||| |    
T  49250200 ggaaatgttaacttgtacccttaaggtacaggttaatacatcaaatataaaaatagtttattgaaatgtctgtattacatttaatctttaactttttaat 49250101  T
Q  389 gatttgaatgcaca 402  Q
    || |||||||||||    
T  49250100 gaattgaatgcaca 49250087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 55323073 - 55322989
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||| ||||||||||||| ||||| |||||| |||| |||| |||| ||||||||||||| || ||| ||| |||||||||||    
T  55323073 aagttagtgaatcaaatatagaaataatttattggaatttgtgcattacatttaatctttaactttttaatgaattgaatgcaca 55322989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 9319892 - 9319950
Alignment:
Q  321 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||| ||||||||||||||||| ||||||  |||||||| ||||||||||||||||||    
T  9319892 ttaattaatcaaatataaaaataatttattgcaatgtgtgcattatatttaatctttaa 9319950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 41236148 - 41236087
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||| ||||||||||| ||||| ||||||| |||||||| |||| |||||||||||||    
T  41236148 aagttaataaatcaaatatagaaataatttattaaaatgtgtgcattacatttaatctttaa 41236087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 31204441 - 31204357
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||||| ||||||||||| ||||  |||||| ||| |||||||||| ||||||||||||| || ||| | | |||||||||||    
T  31204441 aagttaataaatcaaatatagaaatggtttattggaaggtgtgtattacatttaatctttaactttttaataaattgaatgcaca 31204357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 50328531 - 50328420
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||| |||||   ||||| || |||||||||||||| ||||| |||||   |||| ||||||||| |||| ||||||||||||| || ||| |||    
T  50328531 aaatgttaacttgtgtccttaaggtacaagttaatgaatcagatatagaaataggatattggaatgtgtgcattacatttaatctttaactttttaatga 50328432  T
Q  391 tttgaatgcaca 402  Q
     ||| |||||||    
T  50328431 attggatgcaca 50328420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 399
Target Start/End: Original strand, 53133448 - 53133558
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||| ||||||  |||||  | ||||||||||| |||||||| |||||  | ||| |||| |||| |||| ||||||||||||| || ||| |    
T  53133448 ggaaatgttaacttgtgcccttaaggcacaagttaatgaaacaaatatagaaataactcattggaatatgtgcattacatttaatctttaaatttttaat 53133547  T
Q  389 gatttgaatgc 399  Q
    || ||||||||    
T  53133548 gagttgaatgc 53133558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 37056185 - 37056270
Alignment:
Q  318 aagttaatgaatcaaatataa-aaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||||||||||||||||||| ||||| |||||| ||| | ||| |||| ||||||||||||| || ||| ||| |||||| ||||    
T  37056185 aagttaatgaatcaaatataataaataatttattggaaagggtgcattaaatttaatctttaactttttaatgaattgaatacaca 37056270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 38354254 - 38354343
Alignment:
Q  290 gaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||||| |||||   |||||||| |||||||||||||||||||| ||||| ||||||  ||||| || |||| | ||||| |||||    
T  38354254 gaaatgttaacttgtgtccttaagatacaagttaatgaatcaaatatagaaataatttattgaaatgtatgcattacaattaatgtttaa 38354343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 47388488 - 47388533
Alignment:
Q  334 tataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||||| ||||||  ||||||||||||| |||||||||||||    
T  47388488 tataaaaatattttattgaaatgtgtgtattacatttaatctttaa 47388533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 17340339 - 17340387
Alignment:
Q  331 aaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||| |||||| |||||| ||||||||| |||| |||||||||||||    
T  17340339 aaatatgaaaatagtttattggaatgtgtgcattacatttaatctttaa 17340387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 45220061 - 45219989
Alignment:
Q  330 caaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||| || ||||| | |||| ||||| |||||||| |||||||||||||| | ||| ||| |||||||||||    
T  45220061 caaatgtataaatattatattggaatgcgtgtattaaatttaatctttaatgttttaatgaattgaatgcaca 45219989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 40298414 - 40298303
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||||||||||| |||||||| |||||||| | | ||||||||||||| |||||||||||||||  |||| |||||||||||||  | ||| |||    
T  40298414 aaatgttaatttgtgctcttaagatacaagttaataagttaaatataaaaataatttattagaatgtgtacattacatttaatctttaacattttaatga 40298315  T
Q  391 tttgaatgcaca 402  Q
     |||||||||||    
T  40298314 attgaatgcaca 40298303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 402
Target Start/End: Original strand, 19961516 - 19961634
Alignment:
Q  284 taaatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttc 383  Q
    |||| |||||||||||||||||   ||| || | ||||||||||||||||  || ||||| |||||| |||||||||||||  ||||||||||||||||     
T  19961516 taaagggaaatgttaatttgtgtccttatgacacaagttaatgaatcaaaagtagaaatagtttattggaatgtgtgtatttcatttaatctttaatttt 19961615  T
Q  384 ttagtgatttgaatgcaca 402  Q
    ||| | | |||||||||||    
T  19961616 ttaataaattgaatgcaca 19961634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 730851 - 730796
Alignment:
Q  321 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctt 376  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  730851 ttaatgattcaaatatagaaataatttattagaatgtgtgtattacatttaatctt 730796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 3938374 - 3938485
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    |||||| |||||||||||| |||||| | |||||||||| | ||||||| ||||| |||||| |||||| || |||  ||||||| | |||||| ||| |    
T  3938374 ggaaatattaatttgtgctcttaagacacaagttaatgatttaaatatagaaataatttattggaatgtatgcattgcatttaatatctaattttttaat 3938473  T
Q  389 gatttgaatgca 400  Q
    || |||||||||    
T  3938474 gaattgaatgca 3938485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 30685546 - 30685657
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||| ||||||| |||||| ||||  ||||||| |||||||| ||||| ||||||  ||| |||| |||| ||||||| |||| ||| ||| |||    
T  30685546 aaatgttaacttgtgctcttaagacataaactaatgaaacaaatatagaaatagtttattgaaatatgtgcattacatttaatttttagttttttaatga 30685645  T
Q  391 tttgaatgcaca 402  Q
     |||||||||||    
T  30685646 attgaatgcaca 30685657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 14576085 - 14575972
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||||||||||  |||||| |||||||||| | | ||||||| ||||| |||||   |||||||| |||| ||| ||| ||||| || ||| |    
T  14576085 ggaaatgttaatttgtgcccttaagacataagttaataagtaaaatatagaaatagtttatcgaaatgtgtgcattacattgaatatttaactttttaat 14575986  T
Q  389 gatttgaatgcaca 402  Q
    || |||||||||||    
T  14575985 gaattgaatgcaca 14575972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 30721399 - 30721479
Alignment:
Q  322 taatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||||| |||||||| ||||| ||||||  |||||||| |||| ||||||| |||||||| ||| ||| |||||||||||    
T  30721399 taatgaaacaaatatagaaatagtttattgaaatgtgtgcattacatttaatttttaattttttaatgagttgaatgcaca 30721479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 33208416 - 33208500
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||||||||||||||||| ||||| ||||||  ||||| ||||||| ||||||| ||||| || ||| ||| | |||||||||    
T  33208416 aagttaatgaatcaaatatagaaataatttattgaaatgtatgtattaaatttaatatttaactttttaatgaatggaatgcaca 33208500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 4746048 - 4746126
Alignment:
Q  320 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatg 398  Q
    |||||||||||||||||| ||||| |||||| |||||| | |||| |||||| ||||||| || ||| ||| |||||||    
T  4746048 gttaatgaatcaaatatagaaataatttattggaatgtatttattttatttattctttaactttttaatgaattgaatg 4746126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 14622610 - 14622539
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtg 360  Q
    ||||||| ||||||||||| |||| | | |||||||||| ||||||||| ||||| |||||| ||| |||||    
T  14622610 ggaaatgctaatttgtgctcttaaaacacaagttaatgattcaaatatagaaataatttattggaaggtgtg 14622539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 3257544 - 3257486
Alignment:
Q  321 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||| ||||||||||||||||| |||||| |||| |||| |||  |||||||||||||    
T  3257544 ttaataaatcaaatataaaaatagtttattggaatatgtgcatttcatttaatctttaa 3257486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 36527423 - 36527484
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||||||| |||||||||| ||||| |||||| || |||||| |||  |||||||||||||    
T  36527423 aagttaatgtatcaaatatagaaatagtttattggagtgtgtgcattgcatttaatctttaa 36527484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 25983052 - 25983120
Alignment:
Q  311 aagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||| |||||||||||| | ||||||| ||||| |||||| |||| |||| |||  |||||||||||||    
T  25983052 aagacataagttaatgatttaaatatagaaataatttattggaatatgtgcattgcatttaatctttaa 25983120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 40740670 - 40740777
Alignment:
Q  295 gttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttg 394  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||| || || |||||||||||||||  |||| ||||||||||||| || ||| |||||||    
T  40740670 gttaacttgtgcccttaagatacaagttaaagaatcaaatatagaagtagtttattagaatgtgtacattacatttaatctttaactttttaatgatttg 40740769  T
Q  395 aatgcaca 402  Q
    ||||||||    
T  40740770 aatgcaca 40740777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 4993390 - 4993279
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||||||||||| |||||  |||||||||||| ||||||||| |||||   |||| |||| ||||||||  ||||||||||||| || ||| |    
T  4993390 ggaaatgttaatttgtgctcttaaggcataagttaatgattcaaatatagaaata--atatttgaatatgtgtattgcatttaatctttaactttttaat 4993293  T
Q  389 gatttgaatgcaca 402  Q
    || || ||||||||    
T  4993292 gaattaaatgcaca 4993279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 4989351 - 4989291
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttta 378  Q
    |||||||| ||||||||||| ||||| ||||||  ||||||||||||| ||||||||||||    
T  4989351 aagttaattaatcaaatatagaaataatttattgtaatgtgtgtattacatttaatcttta 4989291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 39108669 - 39108605
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 382  Q
    |||||||||| ||||||||||||||| |||||| ||||||||| |||  |||||| |||||||||    
T  39108669 aagttaatgattcaaatataaaaataatttattggaatgtgtgcattgcatttaaactttaattt 39108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 5957156 - 5957045
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||| ||||| | ||||| || |||||||||||||||   || ||||| |||||| ||||||| | |||  || |||||||||| || ||| |||    
T  5957156 aaatgttaacttgtgttcttaaggtacaagttaatgaatcaatagtagaaataatttattggaatgtgcgcatttcatataatctttaactttttaatga 5957057  T
Q  391 tttgaatgcaca 402  Q
     |||||||||||    
T  5957056 attgaatgcaca 5957045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 32062275 - 32062359
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaat-ttcttagtgatttgaatgcaca 402  Q
    |||||||||||||||||||| |||||  ||||| ||||||||  |||| ||||||||||| || || ||| ||| |||||||||||    
T  32062275 aagttaatgaatcaaatatagaaata-gttattggaatgtgtacattacatttaatcttttatctttttaatgaattgaatgcaca 32062359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 400
Target Start/End: Complemental strand, 10881981 - 10881878
Alignment:
Q  297 taatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaa 396  Q
    ||||||||||  |||| ||| ||||||||| |||||||||| ||||  |||||||||||||||| |||| |||||||||||||||| ||| ||| |||||    
T  10881981 taatttgtgcccttaatatacaagttaatgcatcaaatatagaaattgtttattagaatgtgtgcattacatttaatctttaattttttaatgaattgaa 10881882  T
Q  397 tgca 400  Q
    ||||    
T  10881881 tgca 10881878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 15279163 - 15279050
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    |||||||||||||| |||  |||||| | |||||||||| ||||||||| ||||| |||||||||||||||| |||  ||||||| ||||| || ||| |    
T  15279163 ggaaatgttaatttctgcccttaagacacaagttaatgattcaaatatagaaataatttattagaatgtgtgcattgcatttaatatttaactttttaat 15279064  T
Q  389 gatttgaatgcaca 402  Q
     | |||||||||||    
T  15279063 aaattgaatgcaca 15279050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 51295848 - 51295764
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||||||||||||||| || ||||| |||||| ||||||||| |||| ||||||||||||| || ||| ||| |||||||||||    
T  51295848 aagttaatgaatcaaatgtagaaataatttattggaatgtgtgcattacatttaatctttaactttttaatgaattgaatgcaca 51295764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 33828203 - 33828121
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgca 400  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||| || |||||||||| || ||| | | |||||||||    
T  33828203 aagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgca 33828121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 400
Target Start/End: Original strand, 33839762 - 33839844
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgca 400  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||| || |||||||||| || ||| | | |||||||||    
T  33839762 aagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatctaatctttaactttttaataaattgaatgca 33839844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 42549347 - 42549258
Alignment:
Q  290 gaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||||| ||||||  ||||| || |||||||||| |||||||||||||||  | ||| |||||||| |||| |||||| |||||||    
T  42549347 gaaatgttaagttgtgcctttaaggtacaagttaatgattcaaatataaaaataaataattggaatgtgtatattttatttagtctttaa 42549258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 34711071 - 34710960
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||| ||||||  ||| || | ||||||||||| |||||||| |||||  | |||  ||||||||||||| ||||||||||||  || ||| |||    
T  34711071 aaatgttaacttgtgcccttatgacacaagttaatgaaacaaatatagaaatagctcattgaaatgtgtgtattacatttaatctttagctttttaatga 34710972  T
Q  391 tttgaatgcaca 402  Q
     |||||||||||    
T  34710971 gttgaatgcaca 34710960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 51050170 - 51050117
Alignment:
Q  329 tcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 382  Q
    ||||||||| ||||| |||||| ||||||||||| || |||||||| |||||||    
T  51050170 tcaaatatataaataatttattggaatgtgtgtaatacatttaatcgttaattt 51050117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 420
Target Start/End: Complemental strand, 29587251 - 29587151
Alignment:
Q  321 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcacagc-ttttagagaacattt 419  Q
    ||||||| ||||||||| |||||  ||||| ||||||||| ||| |||||| ||||||| || | | ||  |||||||||||   |||||||||||||||    
T  29587251 ttaatgattcaaatatagaaataaattattggaatgtgtgcattttatttagtctttaacttttaaatgcattgaatgcacataattttagagaacattt 29587152  T
Q  420 a 420  Q
    |    
T  29587151 a 29587151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 52124804 - 52124836
Alignment:
Q  345 tttattagaatgtgtgtattatatttaatcttt 377  Q
    |||||||||||||||| ||||||||||||||||    
T  52124804 tttattagaatgtgtgcattatatttaatcttt 52124836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 122572 - 122488
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||||||||||||||||||||||| |||||| ||| || ||||||| |||||||||||||||| ||| | | |||||||||||    
T  122572 aagttaatgaatcaaatataaaaatattttattggaacgtatgtattacatttaatctttaattttttaatcaattgaatgcaca 122488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 402
Target Start/End: Complemental strand, 37700360 - 37700278
Alignment:
Q  320 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||||||||||||||| |||||| |||||| ||||||||| |||||||||||| || ||||| ||| ||| |||||||||||    
T  37700360 gttaatgaatcaaatatgaaaatagtttattggaatgtgtgcattatatttaattttaaattttttaatgaattgaatgcaca 37700278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 24657388 - 24657295
Alignment:
Q  286 aatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||||| ||||||||||  |||||| |||| | ||||| ||||||||| ||||  |||||| ||||||||| ||||||||||||||||||    
T  24657388 aatggaaatgataatttgtgcccttaagacataaataaatgattcaaatatagaaattatttattggaatgtgtgcattatatttaatctttaa 24657295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 12931594 - 12931530
Alignment:
Q  317 taagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 382  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||| ||||||| ||||||||    
T  12931594 taagttaatgaatcaaatatataaatagtttattggaatgtgtgtattacatttaat-tttaattt 12931530  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 419
Target Start/End: Original strand, 20378993 - 20379122
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    |||||||||||| |||  |||| | | |||||||||| ||||||||| |||||  ||||||||||||||| ||| |||||| ||||||| || | | ||     
T  20378993 aaatgttaatttatgcccttaatacacaagttaatgattcaaatatagaaataaattattagaatgtgtgcattttatttagtctttaacttttaaatgc 20379092  T
Q  391 tttgaatgcac-agcttttagagaacattt 419  Q
     |||||||||| |  |||||||||||||||    
T  20379093 attgaatgcacaaaattttagagaacattt 20379122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 49447715 - 49447627
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||||||| | ||||  |||||| | || ||||||| |||||||||||||||  ||||| ||||||||| ||| |||||| |||||||    
T  49447715 aaatgttaactcgtgcctttaagacacaaattaatgattcaaatataaaaataaattattggaatgtgtgcattttatttagtctttaa 49447627  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 28392265 - 28392186
Alignment:
Q  323 aatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||||||||||| | ||||| ||||||  |||||||| |||| ||||||||||||| || ||| ||  |||||||||||    
T  28392265 aatgaatcaaataaacaaatagtttattgaaatgtgtgcattacatttaatctttaactttttaatgtattgaatgcaca 28392186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 49230124 - 49230069
Alignment:
Q  320 gttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttt 377  Q
    ||||||||||||||||||||||   | ||||  |||||||||||||||||||||||||    
T  49230124 gttaatgaatcaaatataaaaaa--tatattgaaatgtgtgtattatatttaatcttt 49230069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 43177021 - 43176964
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactt 346  Q
    ||||||| |||||||||| || |||| | |||||||| ||||||||||| ||||||||    
T  43177021 ggaaatgctaatttgtgcgatcaagacacaagttaattaatcaaatatagaaatactt 43176964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 402
Target Start/End: Original strand, 53287384 - 53287497
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||| ||||||  |||||  | |||||||||| ||||||||| ||||  |||||| ||||||||| |||  ||||||| | ||| || | | |    
T  53287384 ggaaatgttaacttgtgcccttaagccacaagttaatgattcaaatatagaaatcatttattggaatgtgtgcattgcatttaatttgtaacttttcaat 53287483  T
Q  389 gatttgaatgcaca 402  Q
    || |||||||||||    
T  53287484 gaattgaatgcaca 53287497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 28554166 - 28554218
Alignment:
Q  321 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaat 373  Q
    ||||||| ||||||||| ||||| ||||||  |||||||||||| ||||||||    
T  28554166 ttaatgattcaaatatagaaataatttattgaaatgtgtgtattgtatttaat 28554218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 39990856 - 39990772
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaat 373  Q
    ||||||| ||| ||||||  | |||| | |||||||||||||||| || |||||| ||||||  |||||||| |||| |||||||    
T  39990856 ggaaatgctaacttgtgccctcaagacacaagttaatgaatcaaagatgaaaataatttattgaaatgtgtgaattacatttaat 39990772  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 23358453 - 23358514
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||||||||||||| |||||||||| ||||||  |||| ||||||||||||||||||||||    
T  23358453 aagttaatgaatcaattataaaaatattttatttaaatgcgtgtattatatttaatctttaa 23358514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 43252004 - 43251940
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaattt 382  Q
    |||||||||| | ||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||    
T  43252004 aagttaatgatttaaatatagaaataatttattagaatgtgtgttttacatttaatctttaattt 43251940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 39983062 - 39983123
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||||| | ||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  39983062 aagttaatgattaaaatatagaaataatttattagaatgcgtgtattctatttaatctttaa 39983123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 37828346 - 37828405
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatcttt 377  Q
    |||||||| ||||||||||| ||||| |||||| ||||| |||||||| |||||||||||    
T  37828346 aagttaataaatcaaatatagaaatagtttattggaatgcgtgtattaaatttaatcttt 37828405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 23363754 - 23363812
Alignment:
Q  321 ttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    |||||||||||| |||||||||| |||||| ||||| |||||||| |||| ||||||||    
T  23363754 ttaatgaatcaattataaaaatattttattggaatgcgtgtattacattttatctttaa 23363812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 3398969 - 3398914
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaat 373  Q
    |||||||| ||||||||||||||||| ||||||  | ||||||||||| |||||||    
T  3398969 aagttaataaatcaaatataaaaatagtttattgcattgtgtgtattaaatttaat 3398914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 3767279 - 3767200
Alignment:
Q  301 ttgtgctattaagatataagttaatgaatcaaatat-aaaaatactttattagaatgtgtgtattatatttaatctttaa 379  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||| |||||| |||| | || |||| ||||||| |||||    
T  3767279 ttgtgcttttaagatacaagttaatgaatcaaatgtaaaaaataatttatttgaatatatgcattacatttaatatttaa 3767200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 25971417 - 25971528
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||| |||||   ||||| || || |||||  |||||||||||||||  |||||| |||||  || |||| ||||||| |||||||| ||| |||    
T  25971417 aaatgttaacttgtgtctttaaggtacaaattaatacatcaaatataaaaattgtttattggaatgcatgcattacatttaatatttaattttttaatga 25971516  T
Q  391 tttgaatgcaca 402  Q
     |||||||||||    
T  25971517 attgaatgcaca 25971528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 400
Target Start/End: Complemental strand, 48634060 - 48633969
Alignment:
Q  309 ttaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgca 400  Q
    |||||| | |||||||| ||| ||||||||||||| |||||| ||||||||  ||| | |||| ||||||| || ||| ||| |||||||||    
T  48634060 ttaagacacaagttaataaataaaatataaaaatagtttattggaatgtgtacattgtctttagtctttaactttttaatgaattgaatgca 48633969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 25594582 - 25594648
Alignment:
Q  336 taaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    |||||||| | |||||||||||||| |||| |||||||||||||| | ||| | | |||||||||||    
T  25594582 taaaaataatgtattagaatgtgtgcattaaatttaatctttaatattttaataaattgaatgcaca 25594648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 44966183 - 44966070
Alignment:
Q  289 ggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagt 388  Q
    ||||||||||| ||||||  |||||  | |||||||||| ||||||||| || || |||||| ||||||||| |||  ||||||||||||| || ||| |    
T  44966183 ggaaatgttaacttgtgcccttaaggcacaagttaatgattcaaatatagaattaatttattggaatgtgtgcattgcatttaatctttaactttttaat 44966084  T
Q  389 gatttgaatgcaca 402  Q
    || |||||||||||    
T  44966083 gaattgaatgcaca 44966070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 31663555 - 31663445
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtga 390  Q
    ||||||||| |||||  |||||  || |||||||| || |||||||| ||||| |||||| ||||||||| |||||||||||| ||||| || | | |||    
T  31663555 aaatgttaacttgtgtcattaaagtacaagttaattaaacaaatatataaatagtttattggaatgtgtgcattatatttaat-tttaacttttgaatga 31663457  T
Q  391 tttgaatgcaca 402  Q
     |||||||||||    
T  31663456 attgaatgcaca 31663445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 34242357 - 34242437
Alignment:
Q  290 gaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatattt 370  Q
    |||||| ||| |||||  |||||  ||||||||||||||||||||||| ||||| |||||| |||||| || |||| ||||    
T  34242357 gaaatgctaaattgtgtcattaaagtataagttaatgaatcaaatatataaataatttattggaatgtatgcattacattt 34242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 40711303 - 40711219
Alignment:
Q  318 aagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttcttagtgatttgaatgcaca 402  Q
    ||||| |||| ||||||||||||||  ||||||  |||||||||||| |||||||| ||||| || ||| ||| || ||||||||    
T  40711303 aagttcatgattcaaatataaaaattatttattgaaatgtgtgtattgtatttaatttttaactttttaatgaattaaatgcaca 40711219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 380
Target Start/End: Original strand, 14839593 - 14839682
Alignment:
Q  291 aaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaat 380  Q
    |||||||||||| |  | |||||||| |||||||| | ||||||||||||||| | ||||| | | |||| |||| ||||||| ||||||    
T  14839593 aaatgttaatttatattcttaagatacaagttaataactcaaatataaaaataatgtattaaattatgtgaattaaatttaatttttaat 14839682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 402
Target Start/End: Original strand, 66112 - 66228
Alignment:
Q  286 aatggaaatgttaatttgtgctattaagatataagttaatgaatcaaatataaaaatactttattagaatgtgtgtattatatttaatctttaatttctt 385  Q
    ||||||||||||||  ||||   |||||| | ||||||||||||||||| ||  |||| |||||| ||||   || |||| ||||||| ||||| || ||    
T  66112 aatggaaatgttaacgtgtgtctttaagacacaagttaatgaatcaaatgtaggaatattttattggaattcatgcattacatttaatttttaacttttt 66211  T
Q  386 agtgatttgaatgcaca 402  Q
    ||||| |||||||||||    
T  66212 agtgaattgaatgcaca 66228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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