View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_5 (Length: 515)
Name: NF20187_low_5
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 188 - 461
Target Start/End: Original strand, 46744590 - 46744863
Alignment:
| Q |
188 |
gcatgttagggtcatgatggtaagttcacaaaatcccataaatctacgaaatagaattgatgctataaataagcaaatacaagatcataacacaagaaaa |
287 |
Q |
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| T |
46744590 |
gcatgttagggtcatgatggtaagttcacaaaatcccataaatctacgaaatagaattaatgctataaataagctaatacaagatcataacacaagaaaa |
46744689 |
T |
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| Q |
288 |
cattaggacacatagctcaaacatgatgaaagattttctgaacaagtgtggtgggtatggaatcatagatggtgggtttgccacagagcttgaacgccat |
387 |
Q |
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| T |
46744690 |
cattaggccacatagctcaaacatgatgaaagattttctgaacaagtgtggtgggtatggaatcatagatggtgggtttgccacagagcttgaacgccat |
46744789 |
T |
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| Q |
388 |
ggagtagacctcaatgacccactttggagtgccaaatgcctctttacttccccacatcttgtccgaagggtacc |
461 |
Q |
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| T |
46744790 |
ggaattgacctcaatgacccactttggagtgccaaatgcctctttacttccccacatcttgtccgaagggtacc |
46744863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 46744424 - 46744557
Alignment:
| Q |
18 |
aagggaagcttgaaaattatcatggtcaaaacaatcttgctttatggagtagtagaaacacaaaaataattcttacgaataaagatcccgtttgtgttga |
117 |
Q |
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| T |
46744424 |
aagggaagcttgaaaattatcatggtcgaaacaatcttgctttatggagtagtagaaacacaaaaataatttttacgaataaaga-cccgtttgtgttga |
46744522 |
T |
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| Q |
118 |
gatttgcatttcttgatatcgaaatcaacttgact |
152 |
Q |
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| T |
46744523 |
gacttgcatttcttgatatggaaatcaacttgact |
46744557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 429
Target Start/End: Complemental strand, 38139190 - 38139134
Alignment:
| Q |
373 |
gagcttgaacgccatggagtagacctcaatgacccactttggagtgccaaatgcctc |
429 |
Q |
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| T |
38139190 |
gagcttgaacgccatggcgccgacctcaatgatcccctttggagcgccaaatgcctc |
38139134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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