View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_6 (Length: 512)
Name: NF20187_low_6
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 502
Target Start/End: Complemental strand, 7568746 - 7568257
Alignment:
| Q |
13 |
acacttacacttggaaatggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaaca |
112 |
Q |
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| T |
7568746 |
acacttacacttggaaatggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaaca |
7568647 |
T |
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| Q |
113 |
cttcccaaagctgctcccaaaaatccaataactgatccaactataattttccaatcaaatttcatttcctgctcaaccagccagtaaatataatgcattt |
212 |
Q |
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| T |
7568646 |
cttcccaaagctgctcccaaaaatccaataattgatccaactataattttccaatcaaatttcatttcctgctcaaccagccagtaaatataatgcattt |
7568547 |
T |
|
| Q |
213 |
cagatatatatactatataaaaagaaataccaattaaccaaaacacatatgaaaattaatgaataatgttatgaactcacaggccaaacaggttcataag |
312 |
Q |
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| T |
7568546 |
cagatatatatactatataaaaagaaataccaattaaccaaaacacatatgaaaattaatgaataatgttatgaactcacaggccaaacaggttcataag |
7568447 |
T |
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| Q |
313 |
aagactttccactttcccataagaaatcaaccattgcttttagaaatccttttgtttctttctcaacaaactttgctggttctttttctttcaaaactct |
412 |
Q |
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| T |
7568446 |
aagactttccactttcccataagaaatcaaccattgcttttagaaatccttttgtttctttctcaacaaactttgctggttctttttctttcaaaactct |
7568347 |
T |
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| Q |
413 |
ttcagctaaactgacattgcagatcataacaagtatacacatgatcagccatgttgctgcaataaccaaagaactaggcttgtggttcat |
502 |
Q |
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| T |
7568346 |
ttcagctaaactgacattgcagatcataacaaggatacacatgatcagccatgttgctgcaataaccaaagaactaggcttgtggttcat |
7568257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 33126687 - 33126845
Alignment:
| Q |
31 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctccc |
130 |
Q |
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||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
33126687 |
ggctgtagaagactttggatcaaaaccaatgatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctcca |
33126786 |
T |
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| Q |
131 |
aaaaatccaataactgatccaactataattttccaatcaaatttcatttcctgctcaac |
189 |
Q |
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| T |
33126787 |
aaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctcaac |
33126845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 50747481 - 50747409
Alignment:
| Q |
71 |
agcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctcccaaaaatccaataa |
143 |
Q |
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|||||||| || || || |||||||| |||||||||||||||||||| || |||||||| |||||||||||| |
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| T |
50747481 |
agcataggaacgaatatgccaccaccacctacacctccaacacttccaaacgctgctccacaaaatccaataa |
50747409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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