View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_8 (Length: 451)
Name: NF20187_low_8
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 7552943 - 7552514
Alignment:
| Q |
19 |
aggacaaggcagcaagtcctgtagtaaactagtatattcattttgaagcaaacttatactgatgatggttgtgagtggaagactagcaaaaaacttcttc |
118 |
Q |
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| T |
7552943 |
aggacaaggcaacaagtcctgtagtaaactagtatattcattttgaagcaaacttatactgatgatgattgtgagtgggagactagcaaaaaacttcttc |
7552844 |
T |
|
| Q |
119 |
acgtattctgcaagatttatggtggaatcaggagcaattctgcaacacgaagatacacgaa----tgagagtattgcttcaggttgtatttgaaattatt |
214 |
Q |
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| T |
7552843 |
acatattctgtaagatctatggtggaatcaggagcaattctgcaacacgaagaaacacatacagttaagagtaatgcttcaggttgtatttgaaattatt |
7552744 |
T |
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| Q |
215 |
catttctttattatgaaataagaacaatattttaccttagtgaatcaattgtgccttctttcatgcaagaagatccagtaacaaatggaccctgaaattg |
314 |
Q |
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| T |
7552743 |
catttgtttattaagaaataagaacaatattttaccttagtgaatcaattgtgccttctttcatgcaagaagatccagtaacaaatggaccctgaaattg |
7552644 |
T |
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| Q |
315 |
aataatttaatgccttgtgcctgtcatatatatca---taatgcagcataataaaacaaaagatgaagcatatgacaaatgcctttatatttgttattga |
411 |
Q |
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| T |
7552643 |
aataatttaatgccttgtgcctgtcatatatatcataataatgcagcataataaaacaaaagatgaagcatatgacaaatgcctttatatttgttattga |
7552544 |
T |
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| Q |
412 |
aaaaaccagtggtaaactacttgtcctatg |
441 |
Q |
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| T |
7552543 |
aaaaaccagtggtaaactacttgtcctatg |
7552514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 1138557 - 1138364
Alignment:
| Q |
18 |
caggacaaggcagcaagtcctgtagtaaactagtatattcattttgaagcaaacttatactgatgatggttgtgagtggaagactagcaaaaaacttctt |
117 |
Q |
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||||| || ||| ||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
1138557 |
caggataaagcaacaactcctgtagtaaactagtatattcacgatcaagcaaacttataccgatgatggttgtgagtggaagacgggcaaaaaaattctt |
1138458 |
T |
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| Q |
118 |
cacgtattctgcaagatttatggtggaatcaggagcaattctgcaacacgaagatacac---gaatgagagtattgcttcaggttgtatttgaa |
208 |
Q |
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| T |
1138457 |
cacatgttctgctaaatctacagtggaatcaggggcaatcctgcagcatggagaaacacatacaattagagtattggtccaggttgtatttgaa |
1138364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 1137980 - 1137873
Alignment:
| Q |
204 |
ttgaaattattcatttctttattatgaaataagaacaatattttaccttagtgaatcaattgtgccttctttcatgcaagaagatccagtaacaaatgga |
303 |
Q |
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| T |
1137980 |
ttgaatttattcatttctttcttatgcaataagaacaat-ttttaccttagtgagtcaaatgcgacttctctgatggaagaagatccagtaacatatgga |
1137882 |
T |
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| Q |
304 |
ccctgaaat |
312 |
Q |
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||||||||| |
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| T |
1137881 |
ccctgaaat |
1137873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 1137745 - 1137681
Alignment:
| Q |
358 |
cataataaaacaaaagatgaagcatatgacaaatgcctttatatttgttattgaaaaaaccagtg |
422 |
Q |
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| T |
1137745 |
cataaaaaaaccaatgatgaagcatatgacaaatgcctttatattttttattgaaaaacccagtg |
1137681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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