View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20187_low_9 (Length: 433)
Name: NF20187_low_9
Description: NF20187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20187_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 59 - 280
Target Start/End: Complemental strand, 32777758 - 32777540
Alignment:
| Q |
59 |
cgatccagaactcaaa-ctgtaagttgaatggatgctatatctcgtacgaggaaaaggttactaagcttatattgtgattgaatatttcaagtgatgtta |
157 |
Q |
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| T |
32777758 |
cgatccagaactcaaaactgtaagttgaatggatgctatatctcgtacgaggaaaaggttactaagc----attgtaattgaatatttcaagtgatgtta |
32777663 |
T |
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| Q |
158 |
tttcttgtggttgactaggtcacaattgttgacgataatatgaaactacagcagtgcaatagtattcttcaatcaaatcttaaattagctcatgcctcat |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777662 |
tttcttgtggttgactaggtcacaattgttgacgataatatgaaactacagcagtgcaatagtattcttcaatcaaatcttaaattagctcatgcctcat |
32777563 |
T |
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| Q |
258 |
gaggcttttagacagagacagaa |
280 |
Q |
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||||||||||||||||||||||| |
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| T |
32777562 |
gaggcttttagacagagacagaa |
32777540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 336 - 399
Target Start/End: Complemental strand, 32777483 - 32777420
Alignment:
| Q |
336 |
gatatttttgtattttccaatatcaatttaaaaaagttaaatgatcacaaaatgtaaattgaag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32777483 |
gatatttttgtattttccaatatcaatttaaaaaagttaaatgatcacaaaatgtaaattgaag |
32777420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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