View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_high_3 (Length: 458)
Name: NF20188_high_3
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 44101120 - 44101550
Alignment:
| Q |
18 |
cacttttattctcttgtttgttgttactgctgttgctactgattcccgtgcggtacgttcaattcattcatttgtttgtgttatctaacccaacataact |
117 |
Q |
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| T |
44101120 |
cacttttattctcttgtttgttgttactgctgttgctactgattcccgtgcggtacgttcaattcattcatttgtttgtgttatctaacacaacataact |
44101219 |
T |
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| Q |
118 |
tcattgatcatctttttatgaattaaggttgttttcattcatggattttatttttgtatatgcaatgcaggttggtgaattggctggtattgctgttggt |
217 |
Q |
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| T |
44101220 |
tcattgatcatctttttatgaattaaggttgttttcattcatggattttatttttgtatatgcaatgcaggttggtgaattggctggtattgctgttggt |
44101319 |
T |
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| Q |
218 |
gctacagttttgctcaacattcttatctcagggtatggatggaaccttttctttgtccccccacatattatgagttataacgttattgatttgtatttgg |
317 |
Q |
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| T |
44101320 |
gctacagttttgctcaacattcttatctcagggtatggatggaaccttttctttgtccccccacatattatgagttataacgttattgatttgtatttgg |
44101419 |
T |
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| Q |
318 |
ttttcataataagtatatatcaaatcttaaattaagttggaatttaatgataatgtttcaaaggaattaatcatgaaaaactattcctaaggtttttaat |
417 |
Q |
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| T |
44101420 |
ttttcataataagtatatatcaaatcttatattaagttggaatttaatgataatgtttcaaaggaattaatcgtgaaaaactattcctaaggtttttaat |
44101519 |
T |
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| Q |
418 |
gacatgactgtgtccatcaagttagtctctg |
448 |
Q |
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| T |
44101520 |
gacatgactgtgtccatcaagttagtctctg |
44101550 |
T |
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