View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_high_7 (Length: 317)
Name: NF20188_high_7
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28392073 - 28391880
Alignment:
| Q |
1 |
cttaatgggtccgccattgcgaaactcattactaggtgttatcatccagaaacccactggtggatcagaatcaaaaccaatccatccatgaactgtgtta |
100 |
Q |
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| T |
28392073 |
cttaatgggtccaccattgcgaaactcattactcggtgttatcatccagaaacccactggtggatcagaatcaaaaccaatccatccatgaactgtgt-a |
28391975 |
T |
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| Q |
101 |
tctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatattcattcacgtacgtgcatcgatcttttaacc |
195 |
Q |
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| T |
28391974 |
tctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatattcattcacgtacgtgcatcgatcttttaacc |
28391880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 28410956 - 28411126
Alignment:
| Q |
2 |
ttaatgggtccgccattgcgaaactcattactaggtgttatcatccagaaacccactggtggatcagaatcaaaaccaatccatccatgaactgtgttat |
101 |
Q |
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| T |
28410956 |
ttaatgggtccaccattgcgaaactcattacttggtgttatcatccagaaacccacggtcggatcagaatcaagactaatccatccatgaactgtgttat |
28411055 |
T |
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| Q |
102 |
ctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatattcattcac |
172 |
Q |
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| T |
28411056 |
ttatgttctcacatgagtattgatatttatcatccacctgagtacgacaaaatcatttcatattcattcac |
28411126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 28384767 - 28384594
Alignment:
| Q |
1 |
cttaatgggtccgccattgcgaaactcattactaggtgttatcatccagaaacccactggtggatcagaatcaaaaccaatccatccatgaactgtgtta |
100 |
Q |
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| T |
28384767 |
cttaattggtccaccattacgaaattcattactaggtgttatcatccaaaaaccaacaggttcatcagaatcaaaattaatccaaccatgaacagtgtta |
28384668 |
T |
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| Q |
101 |
tctttgttctcacaagagtattgatatttatcatccacctgaaccagtcaaaatcatatcatattcattcacgt |
174 |
Q |
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| T |
28384667 |
tctgtgttctcacatgagtactgatatttatcatccacctgaacccaacaaaattatttcattttcattcacgt |
28384594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 28391859 - 28391778
Alignment:
| Q |
220 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
301 |
Q |
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| T |
28391859 |
gcaggtatctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
28391778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 28411181 - 28411254
Alignment:
| Q |
228 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
301 |
Q |
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| T |
28411181 |
ctacctctcctgtaaattgtgggttatgtggtttggttaatagaactgcttcagggtaagctaaaacttgacct |
28411254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 28384513 - 28384440
Alignment:
| Q |
228 |
ctacctctcctctaaattgtgggttaattgggttggttaatagaactgcttcaggataagctagtacttgacct |
301 |
Q |
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| T |
28384513 |
ctacctctcctctaaattgtggattaattggttttgttaatagaactgcttctttgtaagcaagtacttgacct |
28384440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 52064100 - 52064161
Alignment:
| Q |
79 |
aatccatccatgaactgtgttatctttgttctcacaagagtattgatatttatcatccacct |
140 |
Q |
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| T |
52064100 |
aatccatccatgaacttggctgtctttgttgtcacatgaatattgatacttatcatccacct |
52064161 |
T |
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