View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_1 (Length: 567)
Name: NF20188_low_1
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 2684887 - 2684605
Alignment:
| Q |
17 |
agagtcacatatataattttcgtgtgaatataactagctccaaattttggattgaaagagcatggaaaagaagaaaatacagttttttaattgatatttt |
116 |
Q |
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| T |
2684887 |
agagttacatacataattttcgtgtgaatataactagctctaaattttggattgaaagagcatggaaaagaagaaaatacagttttttaattgatatttt |
2684788 |
T |
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| Q |
117 |
gaattattattacttaatatttcatgaattggatggaaaagaatctgactttgaccaaggaaagaacagggtaagcacgtccttccaaccaaaagtgtgt |
216 |
Q |
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| T |
2684787 |
gaattattattacttaatatttcatgaattggatggaaaagaatctgactttgaccaaggaaagaacagggtaagcacgtccttccaaccaaaagtgtgt |
2684688 |
T |
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| Q |
217 |
tgcatcaaggttctcttcaaacttgtgaccaaagaagacttcctaattgttttaaagtgaaaatgaatattatttcacaatgg |
299 |
Q |
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| T |
2684687 |
tgcatcaaggttctcttcaaacttgtgaccaaagaagacttcctaattgttttaaagtgaaaatgaatattacttcacaatgg |
2684605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 356 - 560
Target Start/End: Complemental strand, 2684548 - 2684341
Alignment:
| Q |
356 |
gagttatgcatattcctgccaactgagcaatgctcatggggacaacttataactatatttactcaccttat-nnnnnnntctcaaatatcacatatttta |
454 |
Q |
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| T |
2684548 |
gagttatgcatgttcctgccaactgagcaatgctcatagggacaacttataactatatttactcacgttataaaaaaaatctcaaatatcacatatttta |
2684449 |
T |
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| Q |
455 |
tannnnnnnaggctgtctaaatatatgacctggcagtcgtgtgactcatgttt--tgggagnnnnnnntgaagttactatcaaattgcatttctccactt |
552 |
Q |
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| T |
2684448 |
tatttttttaggctgtttaaatatatgacctggcagtcgtgtgactcatgttttgtgggagaaaaaaatgaagttactatcaaattgcatttctccactt |
2684349 |
T |
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| Q |
553 |
atcctttg |
560 |
Q |
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| T |
2684348 |
atcctttg |
2684341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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