View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_13 (Length: 228)
Name: NF20188_low_13
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 33446745 - 33446563
Alignment:
| Q |
10 |
tatatcgaaaacctctggattaaatattcggtaactaccctcgagccaggagcaagacttgttttaatccatggcttgacctgatataaaatcacatgga |
109 |
Q |
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| T |
33446745 |
tatatcgaaaacctctggattaaatattcggtaactactcttgagccaggagcaagacttgttttaatccatcgcttgacctgatataaaatcacatgga |
33446646 |
T |
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| Q |
110 |
aacaacatatcaaaatgattgatgttatagttagactatctagccaatcggaatcgaaggtttg--tccaattttcattttga |
190 |
Q |
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| T |
33446645 |
aacaacatatcaaaatgattgatattatagttagactatctagccaatcggaatcgaaggtttgcatccaaatttcattttga |
33446563 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 17039443 - 17039483
Alignment:
| Q |
52 |
gagccaggagcaagacttgttttaatccatggcttgacctg |
92 |
Q |
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| T |
17039443 |
gagcctggagcaagacttgttttaacccaaggcttgacctg |
17039483 |
T |
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