View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_2 (Length: 499)
Name: NF20188_low_2
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 14999297 - 14999019
Alignment:
| Q |
10 |
ataatacttgctaaacaaagtcaaaactttatagataaaataagaca--gaaaattagaaaatacatgatagaaaataacattagttagataatatgaca |
107 |
Q |
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| T |
14999297 |
ataacacttgctaaacaaagtcaaaactttatagatcagataagacaaagaaaattagaaaatgcatgaaagaaaataacattagttagataatatgaca |
14999198 |
T |
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| Q |
108 |
aacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctaga |
207 |
Q |
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| T |
14999197 |
aacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctaga |
14999098 |
T |
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| Q |
208 |
gacaaattgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtattctcaaccacaaaaca |
286 |
Q |
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| T |
14999097 |
gacaaattgttgaaggcatttgcaagcattgatttctccggaagtgtcagtttcctgaagtattgtcaaccacaaaaca |
14999019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 283 - 482
Target Start/End: Complemental strand, 14998992 - 14998793
Alignment:
| Q |
283 |
aacatcaccaaaaggaaatcaacaacgaattcgatcagttgcctttaacggaacaaactaaaggatgattaggtgctataagactcgtatcctgatttct |
382 |
Q |
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| T |
14998992 |
aacatcaccaaaaggaaatcaacaacgaatccgatcagttgcctttagaggaacaaactaaaggacgatcaggttctataaaactcatatcctgatttct |
14998893 |
T |
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| Q |
383 |
tgcaacaagaaaatcacccatttgaagcagtcacgcgaccaggaccattagatcaatcatagtttcaactctgtaaatcaagactaaaatatcgagttga |
482 |
Q |
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| T |
14998892 |
tgcaacaagaaaatcacccatttgaagcagtcatgcgaccaggaccattagatcaatcatagtttcaactctgtaaatcaagactaaaacatagagttga |
14998793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 283 - 482
Target Start/End: Complemental strand, 29467838 - 29467643
Alignment:
| Q |
283 |
aacatcaccaaaaggaaatcaacaacgaattcgatcagttgcctttaacggaacaaactaaaggatgattaggtgctataagactcgtatcctgatttct |
382 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||| || || |||||||||||| |||| |||||||||||| |
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| T |
29467838 |
aacatcaccaaaaggaaatcaataacgaattc--tcagttgtctttagaggaacaaactaatgggagactaggtgctataaaactc--atcctgatttct |
29467743 |
T |
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| Q |
383 |
tgcaacaagaaaatcacccatttgaagcagtcacgcgaccaggaccattagatcaatcatagtttcaactctgtaaatcaagactaaaatatcgagttga |
482 |
Q |
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| T |
29467742 |
tgcaacaagagaatcacctatttgaagcagtcatgcaaccaggaccgtcagatcaatcatagtttcaactctgtaatccaagactaaaatatagagttga |
29467643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 97 - 280
Target Start/End: Complemental strand, 29468054 - 29467871
Alignment:
| Q |
97 |
ataatatgacaaacctgagaatcaaagttaagcatcaccgtatcaacactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgc |
196 |
Q |
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||||||||||||||||||||||||| || ||| ||||| |||||| || ||| | |||| ||||||| ||||| |||||| | | |||||||||||| |
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| T |
29468054 |
ataatatgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggattgctctctttaactatctccaatgccttgacga |
29467955 |
T |
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| Q |
197 |
gattctctagagacaaattgttgaaggcattcgccagcattgatttctccggaagtgtcagtttcctgaagtattctcaaccac |
280 |
Q |
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| T |
29467954 |
tgttatcaggagacaatttggtgaaggcattcgcaagtattaatttctccggatgtgacagtttcctgaagtattgtcaaccac |
29467871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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