View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_4 (Length: 434)
Name: NF20188_low_4
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 27225142 - 27224980
Alignment:
| Q |
1 |
gtacactaaggaaaaactatgggtgttatataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagatgtgccaagaagag |
100 |
Q |
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| T |
27225142 |
gtacactgaggaaaaactatgggt---atataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagatgtgccaagaagag |
27225046 |
T |
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| Q |
101 |
gagatttgataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
166 |
Q |
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| T |
27225045 |
gagattttataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
27224980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 417
Target Start/End: Complemental strand, 27224981 - 27224865
Alignment:
| Q |
301 |
tttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagatta |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27224981 |
tttgacacttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatgacacatgagcttttgtgttagctaaaactaattagatta |
27224882 |
T |
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| Q |
401 |
gtctatgccaagttcat |
417 |
Q |
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| T |
27224881 |
gtctatgcgaagttcat |
27224865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 259270 - 259108
Alignment:
| Q |
1 |
gtacactaaggaaaaactatgggtgttatataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagatgtgccaagaagag |
100 |
Q |
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| T |
259270 |
gtacactgaggaaaaactatgggt---atataaatgaggtatttggaatcttcagaaggagttttcagggaacgtgaagtgaaagatgtgccaagaagag |
259174 |
T |
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| Q |
101 |
gagatttgataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
166 |
Q |
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| T |
259173 |
gagattttataacggtacaattgaaaggattcctagaatgagatcaagtattggcaacaatatgtt |
259108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 417
Target Start/End: Complemental strand, 259109 - 258993
Alignment:
| Q |
301 |
tttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagatta |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
259109 |
tttgacacttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatgacacatgagcttttgtgttagctaaaactaattagatta |
259010 |
T |
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| Q |
401 |
gtctatgccaagttcat |
417 |
Q |
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|||||||| |||||||| |
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| T |
259009 |
gtctatgcgaagttcat |
258993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 302 - 403
Target Start/End: Original strand, 21740047 - 21740148
Alignment:
| Q |
302 |
ttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagattag |
401 |
Q |
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||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||| |||||| |||||| |
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| T |
21740047 |
ttgacgcttccttttccaggcatttgaacaaggtaggaataggtatatgtttaagagatgacacaagaacttttatcttagctaaagctaattggattag |
21740146 |
T |
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| Q |
402 |
tc |
403 |
Q |
| |
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|| |
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| T |
21740147 |
tc |
21740148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 402
Target Start/End: Complemental strand, 10421402 - 10421302
Alignment:
| Q |
302 |
ttgacgcttcctttttcacgcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaactaattagattag |
401 |
Q |
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||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||| |||||| |
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| T |
10421402 |
ttgacgcttccttttcaaggcatctgaacaaggtaggaataggtatatgtttaagagatggcacaggagcttttgttttagctaaaactgattggattag |
10421303 |
T |
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| Q |
402 |
t |
402 |
Q |
| |
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| |
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| T |
10421302 |
t |
10421302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Complemental strand, 26381693 - 26381624
Alignment:
| Q |
321 |
gcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaact |
390 |
Q |
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|||||| |||||||| || ||||| |||||| |||||||| ||||||| | ||||| |||||||||||| |
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| T |
26381693 |
gcacttaaacaaggttggtataggaatatgtataagagatgacacatgtacatttgtcttagctaaaact |
26381624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 390
Target Start/End: Original strand, 5634761 - 5634830
Alignment:
| Q |
321 |
gcacttgaacaaggtaggaataggtatatgtttaagagatcacacatgagcttttgtgttagctaaaact |
390 |
Q |
| |
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|||||| |||||||| || ||||| |||||| |||||||| ||||||| | ||||| |||||||||||| |
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| T |
5634761 |
gcacttaaacaaggttggtataggaatatgtataagagatgacacatgtacgtttgtcttagctaaaact |
5634830 |
T |
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