View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_6 (Length: 337)
Name: NF20188_low_6
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_6 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 43435464 - 43435155
Alignment:
| Q |
19 |
attctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccctaatcatgaaatta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
43435464 |
attctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactatctcgaagctctttcataaccctaatcacgaaatta |
43435365 |
T |
|
| Q |
119 |
tccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaaccacctttttgacaacattccgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| |
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| T |
43435364 |
tccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaaccacctttttaacaacattctgca |
43435265 |
T |
|
| Q |
219 |
ttgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaaactcgtcgaaatcgtcaaatgtgt |
318 |
Q |
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|||||||||||||||||||||||||||| ||| || ||| |||||| ||||||| ||| | ||||||||| |||| ||| ||||||||||||| || |
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| T |
43435264 |
ttgcattttgctcaagcatccctttatagaaatgtgaaagtgcaacaatatcactcttcaaattctcccttttcaaacccgtagaaatcgtcaaatacgt |
43435165 |
T |
|
| Q |
319 |
ctcttcatct |
328 |
Q |
| |
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|||||||||| |
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| T |
43435164 |
ctcttcatct |
43435155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 43426959 - 43426732
Alignment:
| Q |
19 |
attctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccctaatcatgaaatta |
118 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||| |
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| T |
43426959 |
attctgtagataaccagattgctttccaacccaatgaaaaaacttataagcctttaaaggactatttcgaagctctttcataaccctaatcacgaaattg |
43426860 |
T |
|
| Q |
119 |
tccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaaccacctttttgacaacattccgca |
218 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||| | || ||||||||||||| ||||||||| ||||||||||||||||||||| || ||| |
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| T |
43426859 |
tccgaaagttgaattttaaccttctcgagttcattctcaatctcattgtcccaatcagaccctgaaataataccaaccacctttttgacaacactctgca |
43426760 |
T |
|
| Q |
219 |
ttgcattttgctcaagcatccctttata |
246 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
43426759 |
ttgcatcctgctcaagcatccctttata |
43426732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 43443658 - 43443558
Alignment:
| Q |
19 |
attctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccctaatcatgaaatta |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
43443658 |
attctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactatctcgaagctctttcataaccctaatcacgaaatta |
43443559 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
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|
| T |
43443558 |
t |
43443558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 43422382 - 43422275
Alignment:
| Q |
18 |
cattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccctaatcatgaaatt |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |||||| || ||| ||||||| |||| |||||||||||||| ||||| |||| ||| | |
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| T |
43422382 |
cattatgttgataaccagattgcttcccaacccaataaaaaaagttgtaaccctttaaaggacaacttcgaagctctttcaaaacccgtatcacaaaact |
43422283 |
T |
|
| Q |
118 |
atccgaaa |
125 |
Q |
| |
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|||||||| |
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| T |
43422282 |
atccgaaa |
43422275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 20944 - 20638
Alignment:
| Q |
19 |
attctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccctaatcatgaaatta |
118 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
20944 |
attccgttgataactagatttctttccaacccaatgaaaaaacttataagcctttaaaggactatctcgaagctctttcatgaccctaatcacgaaatta |
20845 |
T |
|
| Q |
119 |
tccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaaccacctttttgacaacattccgca |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||| ||| |
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| T |
20844 |
tccgaaag---aattttaaccttctccagttcattctcaaccttatcatcccaatcagacccttaagtaatgccaaccacctttttgacaacattctgca |
20748 |
T |
|
| Q |
219 |
ttgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaaactcgtcgaaatcgtcaaatgtgt |
318 |
Q |
| |
|
||||||| ||||||||||||||||| || ||| || |||| |||||||||||||| ||||| ||||| |||||||||| | |||||||||| |||||| |
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| T |
20747 |
ttgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctccccttttaaactccttgaaatcgtcacatgtgt |
20648 |
T |
|
| Q |
319 |
ctcttcatct |
328 |
Q |
| |
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|||||||||| |
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| T |
20647 |
ctcttcatct |
20638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 40186339 - 40186396
Alignment:
| Q |
23 |
tgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggac |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
40186339 |
tgttgataaccagattgcttcccaacccaatgaaaaaacttgtaagcctttaaaggac |
40186396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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