View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_7 (Length: 337)
Name: NF20188_low_7
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_7 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 44 - 325
Target Start/End: Complemental strand, 14786822 - 14786541
Alignment:
| Q |
44 |
aattcttgactgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaag |
143 |
Q |
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||||||| | |||||||||||| |||||||| || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14786822 |
aattcttaagtgccttaggagaaatatctcgcggaatgaacgaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaag |
14786723 |
T |
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| Q |
144 |
aattacgtgtactcatcacgaatatgaagaagtaccacgaaacaaatgaaccgtcattcccttagacgacatggttcatcacactttcttctttggtccc |
243 |
Q |
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| T |
14786722 |
aattacgtgtactcatcacgaatatgaagaagtaccacgaaacaaaggaacggtcattcccttagacgacatggttcatcacactttcttctttggtccc |
14786623 |
T |
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| Q |
244 |
accgaggtagctgcaattcgttctctccttccggttcatccactacaacaacacaccaactttgaaatcatctctgcatttt |
325 |
Q |
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| T |
14786622 |
accgaggtagctgcaattcgttctctccttccggttcatccactacaacaacacaccgactttgaaatcatctctgcatttt |
14786541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 275
Target Start/End: Complemental strand, 14878692 - 14878445
Alignment:
| Q |
28 |
gcatcaggcatgcttcaattcttgactgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttctaaatg |
127 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
14878692 |
gcatcgggcatgcttcaattcttgagtgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggagcagagagcttcttaatg |
14878593 |
T |
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| Q |
128 |
caaggaacccaccaagaattacgtgtactcatcacgaatatgaagaagtaccacga-aacaaatgaaccgtcattcccttagacgacatggttcatcaca |
226 |
Q |
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| T |
14878592 |
caagggatccaccaagagtgacatataatcatcgtgaatacgatccagaacc-cgacaacaaaggaaccatgtttcccttagacgacatggttcaccgca |
14878494 |
T |
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| Q |
227 |
ctttcttctttggtcccaccgaggtagctgcaattcgttctctccttcc |
275 |
Q |
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| T |
14878493 |
ctttcttcattggtccgaccgaggtagctgcaattcgcactctccttcc |
14878445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 276
Target Start/End: Original strand, 14759049 - 14759295
Alignment:
| Q |
30 |
atcaggcatgcttcaattcttgactgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttctaaatgca |
129 |
Q |
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| T |
14759049 |
atcaggtatgcttcaattcttgaatgccttaggagaaatatctcgtgggatgagtaaaccttcaatctcaccagtgtggagcagagagcttcttaatgca |
14759148 |
T |
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| Q |
130 |
aggaacccaccaagaattacgtgtactcatcacgaatatgaagaagtaccacga-aacaaatgaaccgtcattcccttagacgacatggttcatcacact |
228 |
Q |
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| T |
14759149 |
agggatccaccaatagtgacatgtactcatcgtgaatacgatccagaacc-cgacaacaaaggaaccatgtttcccttagacgacatggttcaccgcact |
14759247 |
T |
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| Q |
229 |
ttcttctttggtcccaccgaggtagctgcaattcgttctctccttccg |
276 |
Q |
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| T |
14759248 |
ttcttcattggtccgaccgaggtagctgcaattcgctctctccttccg |
14759295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 14873815 - 14873682
Alignment:
| Q |
43 |
caattcttgactgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccaccaa |
142 |
Q |
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|||||| ||| ||||||||| | || || |||||||||| |||||||||||||||||| || ||| ||||||||||||||| |||||| | ||||||| |
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| T |
14873815 |
caattcatgaatgccttaggcaaaatttcacgtgggatgaacaaaccttcaatctcaccagtatggcatagagagcttctaaacgcaagggatccaccaa |
14873716 |
T |
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| Q |
143 |
gaattacgtgtactcatcacgaatatgaagaagt |
176 |
Q |
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|| | || || |||||||| ||||||||| |||| |
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| T |
14873715 |
gagtaacatgcactcatcatgaatatgaacaagt |
14873682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 275
Target Start/End: Complemental strand, 84740 - 84506
Alignment:
| Q |
41 |
ttcaattcttgactgccttaggagagatatctcgtgggatgagcaaaccttcaatctcaccggtgtggtgtagagagcttctaaatgcaaggaacccacc |
140 |
Q |
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|||||||| ||| ||| |||| ||| ||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||| |||||| | |||| |
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| T |
84740 |
ttcaattcatgagtgctttagcagaaatatctcagggtatgagaaaaccttcaatctcaccagtgtggtgcagagaaattctaagcgcaagggatgcacc |
84641 |
T |
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| Q |
141 |
aagaattacgtgtactcatcacgaatatgaagaagtaccacgaaacaaatgaaccgtcattcccttagacgacatggttcatcacactttcttctttggt |
240 |
Q |
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|||| | ||||||||||||| ||||| ||| || ||| |||||| || | || ||||||| |||||||| || || |||||||||||||| |
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| T |
84640 |
aagagtgacgtgtactcatcgtgaatacgaaccagaacctgacaacaaagcaaacacattttccttagatgacatggtccaccatgctttcttctttggt |
84541 |
T |
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| Q |
241 |
cccaccgaggtagctgcaattcgttctctccttcc |
275 |
Q |
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| T |
84540 |
gcaaccgaggtagccgcaattcgttctctacttcc |
84506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 12000161 - 12000090
Alignment:
| Q |
204 |
cttagacgacatggttcatcacactttcttctttggtcccaccgaggtagctgcaattcgttctctccttcc |
275 |
Q |
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| T |
12000161 |
cttagatgacatgatgcaccgcactttcttctttggtcccaccgaggtggcgccaattcgtactctccttcc |
12000090 |
T |
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