View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20188_low_9 (Length: 279)
Name: NF20188_low_9
Description: NF20188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20188_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 33446299 - 33446196
Alignment:
| Q |
162 |
cagcacggtagcacattataagctccagtccaggtcaccttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaa |
261 |
Q |
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| T |
33446299 |
cagcacgatagcacattataagctccagtccaggtcaccttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaa |
33446200 |
T |
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| Q |
262 |
ctcg |
265 |
Q |
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|||| |
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| T |
33446199 |
ctcg |
33446196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 33446448 - 33446358
Alignment:
| Q |
13 |
atacttccatgcttaaggttagcatgatgtccttggaaagaaaacttcacctctttatccttttctccttttgatatcccaaatccctgct |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33446448 |
atacttccatgcttaaggttagcatgatgtccttggaaagaaaacttcacctctttatccttttctccttttgatatcccatatccctgct |
33446358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 17040913 - 17040972
Alignment:
| Q |
206 |
tccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcg |
265 |
Q |
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| T |
17040913 |
tccaactttgttatcaagacaagcatgccagtcagccttcatttctttcaaaggcactcg |
17040972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 28306927 - 28306988
Alignment:
| Q |
198 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaagg |
259 |
Q |
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| T |
28306927 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaagg |
28306988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 37235184 - 37235123
Alignment:
| Q |
198 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaagg |
259 |
Q |
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||||||| ||| |||||||| |||||||||| ||||||||| | |||||| ||||||||||| |
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| T |
37235184 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaagg |
37235123 |
T |
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