View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20189_high_3 (Length: 305)

Name: NF20189_high_3
Description: NF20189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20189_high_3
NF20189_high_3
[»] chr2 (1 HSPs)
chr2 (1-289)||(14761595-14761883)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 14761883 - 14761595
Alignment:
Q  1 atgatgctctccatctttatgcattattatgtgaccacctgattttgatttcacattttcataactatgaactttgttgaatgttcatgagcatcattgc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14761883 atgatgctctccatctttatgcaatattatgtgaccacctgattttgatttcacattttcataactatgaactttgttgaatgttcatgagcatcattgc 14761784  T
Q  101 tattttccctagacttgatcaagttacagattttaggtttctcactattcggcctacttttccccaatgtttatcaaatccatgtttttatatgcaacac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14761783 tattttccctggacttgatcaagttacagattttaggtttctcactattcggcctacttttccccaatgtttatcaaatccatgtttttatatgcaacac 14761684  T
Q  201 tgatagatattttctgttcatttgcttttcttgttcaacatttgctgcataccttaacccaatcatttttccctaacacatgcactata 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14761683 tgatagatattttctgttcatttgcttttcttgttcaacatttgctgcataccttaacccaatcatttttccctaacacatgcactata 14761595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University