View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20189_low_1 (Length: 418)
Name: NF20189_low_1
Description: NF20189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20189_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 29 - 406
Target Start/End: Original strand, 34572889 - 34573270
Alignment:
| Q |
29 |
agttccatatgcaaagcttttgtgctgctaaatttaaatcatgtttgggagttcagtattctgtttaaattgccaaaacctattatcaagagccaggttc |
128 |
Q |
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| T |
34572889 |
agttccatatgcaaagcttttgtgctgctaaattaaaatcatgtttgggagttcagtattctgtttaaattgccaaa-cctagtatcaagatccaggttc |
34572987 |
T |
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| Q |
129 |
aatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtcttatggagaacaactttgctatgtcggaacggtactatgataaaa |
228 |
Q |
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| T |
34572988 |
aatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttacaagtctgatggagaacaactttgctatgtcggaacggtactatgataaaa |
34573087 |
T |
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| Q |
229 |
atctagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaatnnnnnnntcaaaagttgaacgtcaaagacccttaagag |
328 |
Q |
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| T |
34573088 |
atctagtggctatggatccattttagatgaatattttgttgagccaacagaagaaaagaaataaaaaaatcaaaagttgaacgtcaaagacccttaagag |
34573187 |
T |
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| Q |
329 |
atttagatatcatatcattaatcaaaacc-----ttattaggtaaataagccacatcccttatatattcaacatttagttcat |
406 |
Q |
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| T |
34573188 |
atttagatatcatatcattaatcaaaaccttattttattaggtaaataagccacatcccttatatattcaacatttagttcat |
34573270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 38499473 - 38499514
Alignment:
| Q |
22 |
tccaacgagttccatatgcaaagcttttgtgctgctaaattt |
63 |
Q |
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| T |
38499473 |
tccaatgagttccatatgcaaagcttttgtgctgctaaattt |
38499514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 38474176 - 38474240
Alignment:
| Q |
115 |
caagagccaggttcaatcaagatgacatcaagttcaatttcataaagtgcaatcaatgttttaca |
179 |
Q |
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| T |
38474176 |
caagagccaggttgaatcaagataacattaacttcaaattcatcaagtgcaatcaacattttaca |
38474240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 38494105 - 38494180
Alignment:
| Q |
25 |
aacgagttccatatgcaaagcttttgtgctgctaaatttaaatcatgtttgggagttc--agtattctgtttaaat |
98 |
Q |
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| T |
38494105 |
aacgagttccatatacaaagcttttgtgatgctaaattaaaattttgtttgtgtgttcatagtgttctgtttaaat |
38494180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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