View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20189_low_10 (Length: 218)

Name: NF20189_low_10
Description: NF20189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20189_low_10
NF20189_low_10
[»] chr1 (4 HSPs)
chr1 (1-187)||(5555758-5555950)
chr1 (162-200)||(5555720-5555758)
chr1 (4-83)||(6293883-6293962)
chr1 (4-83)||(16854816-16854895)
[»] chr7 (3 HSPs)
chr7 (4-83)||(8035578-8035657)
chr7 (4-83)||(38110835-38110914)
chr7 (4-83)||(46045774-46045853)
[»] chr8 (3 HSPs)
chr8 (11-83)||(42000144-42000216)
chr8 (4-83)||(33373065-33373144)
chr8 (12-83)||(45093308-45093379)
[»] chr5 (1 HSPs)
chr5 (4-83)||(14024802-14024881)
[»] chr4 (3 HSPs)
chr4 (4-83)||(1369301-1369380)
chr4 (4-83)||(28945529-28945608)
chr4 (4-83)||(44307391-44307470)
[»] chr3 (1 HSPs)
chr3 (4-83)||(43328862-43328941)
[»] chr2 (3 HSPs)
chr2 (12-83)||(11995904-11995975)
chr2 (4-83)||(24126576-24126655)
chr2 (4-83)||(42865784-42865863)


Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 5555950 - 5555758
Alignment:
Q  1 ttaagtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagcaa------catcagatgc 94  Q
    ||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||| || ||| ||||||||||||||||||       ||||| ||||    
T  5555950 ttaagtctctctccacaataagataagtggtactctccctttacaccatatccaaacttaaatagaggccccatatttcagcatgaaaagcatcacatgc 5555851  T
Q  95 tcacatcaaaaacctattgtaactgtgagtgggaataacttagtgagatgatgaccttgtatgttaatgtcacagtctcacataagaaagttt 187  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5555850 tcacatcagaaacctattgtaactgtgagtgggaataacttagtgagatgatgaccttgtatgttaatgtcacggtctcacataagaaagttt 5555758  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 5555758 - 5555720
Alignment:
Q  162 tgtcacagtctcacataagaaagtttttatttttaaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5555758 tgtcacagtctcacataagaaagtttttatttttaaaca 5555720  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 6293962 - 6293883
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| |||||||| || || | |||||| |||||||||    
T  6293962 agtcactctccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagca 6293883  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 16854895 - 16854816
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||| | ||| |||| ||||||||||| || | |||||| |||||||||    
T  16854895 agtcactctccactataagatgagtggtattctccatccacgccatgtccaaacctaggtacatgccccacatttcagca 16854816  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 8035657 - 8035578
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| | || || ||||||| |||||||| ||||||||||| || | |||||| |||||||||    
T  8035657 agtcactctccactataagatgaatggtattctccctccacaccatgtccaaacctaggtacatgccccacatttcagca 8035578  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 38110835 - 38110914
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| | ||||||||| || | ||||||||||||||||    
T  38110835 agtcactctccactataagatgagtggtattctccctccacgccatgttcaaacctaggtacatgccccatatttcagca 38110914  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 46045853 - 46045774
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| |||||||| || || | |||||| |||||||||    
T  46045853 agtcactctccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagca 46045774  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 42000216 - 42000144
Alignment:
Q  11 ctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||||||||||||| |||| || ||||||| ||| |||| ||||||||||| || | |||||| |||||||||    
T  42000216 ctccactataagattagtggtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagca 42000144  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 33373144 - 33373065
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||  || ||||||| ||| |||| ||||||||||| || | |||||| |||||||||    
T  33373144 agtcactctccactataagatgagttgtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagca 33373065  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 45093379 - 45093308
Alignment:
Q  12 tccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    ||||||||||||| |||| || ||||||| ||| |||| ||||||||||| || | |||||| |||||||||    
T  45093379 tccactataagatgagtggtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagca 45093308  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 14024881 - 14024802
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| |||||||| || || | |||||| |||||||||    
T  14024881 agtcactctccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagca 14024802  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 1369380 - 1369301
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| |||||||| || || | |||||| |||||||||    
T  1369380 agtcactctccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagca 1369301  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 28945529 - 28945608
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| |||||||| || || | |||||| |||||||||    
T  28945529 agtcactctccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagca 28945608  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 44307470 - 44307391
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| ||||||||||||| || |||| || ||||||| ||| |||| ||||||||||| || | |||||| |||||||||    
T  44307470 agtcactctccactataatatgagtggtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagca 44307391  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 43328862 - 43328941
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| | || ||||||||||| || | |||||| |||||||||    
T  43328862 agtcactctccactataagatgagtggtattctccctccacgctatgtccaaacctaggtacatgccccacatttcagca 43328941  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 11995904 - 11995975
Alignment:
Q  12 tccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    ||||||||||||| |||| || ||||||| ||| |||| ||||||||||| || | |||||| |||||||||    
T  11995904 tccactataagatgagtggtattctccctccacgccatgtccaaacctaggtacatgccccacatttcagca 11995975  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 24126576 - 24126655
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| | ||||||||| || | |||||| |||||||||    
T  24126576 agtcactctccactataagatgagtggtattctccctccacgccatgttcaaacctaggtacatgccccacatttcagca 24126655  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 42865863 - 42865784
Alignment:
Q  4 agtccctctccactataagataagtgatactctcccttcacaccatatccaaacctagatataggccccatatttcagca 83  Q
    |||| |||||||||||||||| |||| || ||||||| ||| |||| |||||||| || || | |||||| |||||||||    
T  42865863 agtcactctccactataagatgagtggtattctccctccacgccatgtccaaaccaaggtacatgccccacatttcagca 42865784  T

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