View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20189_low_3 (Length: 369)

Name: NF20189_low_3
Description: NF20189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20189_low_3
NF20189_low_3
[»] chr3 (23 HSPs)
chr3 (7-290)||(43481492-43481775)
chr3 (105-226)||(23162187-23162306)
chr3 (103-252)||(32201039-32201188)
chr3 (103-185)||(40195896-40195978)
chr3 (103-226)||(43978610-43978733)
chr3 (102-252)||(43755567-43755717)
chr3 (103-177)||(16871043-16871117)
chr3 (103-177)||(17731988-17732062)
chr3 (103-177)||(19033219-19033293)
chr3 (103-177)||(53595960-53596034)
chr3 (103-177)||(53596275-53596349)
chr3 (103-169)||(54017640-54017706)
chr3 (112-212)||(23161913-23162013)
chr3 (314-361)||(43481892-43481939)
chr3 (103-182)||(43978948-43979027)
chr3 (103-177)||(23161840-23161913)
chr3 (109-209)||(40196247-40196347)
chr3 (103-211)||(42059845-42059953)
chr3 (103-178)||(23162432-23162507)
chr3 (155-226)||(40196146-40196217)
chr3 (103-177)||(16143438-16143512)
chr3 (103-177)||(48127899-48127973)
chr3 (109-153)||(53981541-53981585)
[»] chr8 (12 HSPs)
chr8 (103-268)||(5981435-5981600)
chr8 (92-262)||(2954507-2954678)
chr8 (102-179)||(2954307-2954384)
chr8 (103-226)||(5981769-5981891)
chr8 (105-173)||(29103302-29103370)
chr8 (103-185)||(14028325-14028407)
chr8 (111-182)||(3671220-3671291)
chr8 (120-177)||(3670883-3670940)
chr8 (116-185)||(4840531-4840600)
chr8 (103-148)||(12156771-12156816)
chr8 (105-252)||(22898024-22898170)
chr8 (103-178)||(11576044-11576118)
[»] chr1 (19 HSPs)
chr1 (94-254)||(43834485-43834646)
chr1 (103-223)||(15327856-15327976)
chr1 (103-221)||(4392232-4392350)
chr1 (103-208)||(4391963-4392068)
chr1 (105-226)||(6182374-6182495)
chr1 (105-232)||(26231684-26231809)
chr1 (103-171)||(25294877-25294945)
chr1 (103-198)||(31973398-31973493)
chr1 (105-167)||(27686618-27686680)
chr1 (102-167)||(5821725-5821790)
chr1 (189-290)||(43834290-43834391)
chr1 (105-217)||(11199925-11200037)
chr1 (103-180)||(12466283-12466360)
chr1 (125-185)||(31739615-31739675)
chr1 (107-162)||(34665908-34665963)
chr1 (134-184)||(4753041-4753091)
chr1 (55-89)||(25994954-25994988)
chr1 (155-224)||(39030133-39030202)
chr1 (190-226)||(34665814-34665850)
[»] chr4 (21 HSPs)
chr4 (105-290)||(47680623-47680808)
chr4 (103-232)||(11307319-11307448)
chr4 (105-226)||(11307614-11307735)
chr4 (94-261)||(8445845-8446013)
chr4 (103-177)||(10396131-10396205)
chr4 (102-290)||(26473573-26473759)
chr4 (103-177)||(10396416-10396490)
chr4 (104-177)||(11197227-11197300)
chr4 (102-181)||(51681537-51681616)
chr4 (103-226)||(51681251-51681373)
chr4 (103-177)||(53468082-53468155)
chr4 (103-177)||(1868051-1868125)
chr4 (102-180)||(48635126-48635204)
chr4 (110-226)||(26080313-26080429)
chr4 (103-185)||(34946481-34946562)
chr4 (94-212)||(27000864-27000985)
chr4 (103-166)||(2917509-2917572)
chr4 (107-162)||(4468933-4468988)
chr4 (125-212)||(33339023-33339110)
chr4 (103-168)||(34946204-34946269)
chr4 (109-177)||(922424-922492)
[»] chr7 (17 HSPs)
chr7 (102-226)||(11776382-11776506)
chr7 (105-182)||(2463159-2463236)
chr7 (102-226)||(45100183-45100307)
chr7 (94-226)||(35589748-35589881)
chr7 (103-185)||(2463445-2463527)
chr7 (103-177)||(27597985-27598059)
chr7 (94-180)||(23578085-23578172)
chr7 (103-182)||(48071386-48071465)
chr7 (94-151)||(11776174-11776232)
chr7 (94-212)||(33730101-33730219)
chr7 (91-182)||(7631284-7631377)
chr7 (103-177)||(21416225-21416299)
chr7 (103-177)||(28445216-28445289)
chr7 (105-170)||(22561956-22562021)
chr7 (103-179)||(5862765-5862841)
chr7 (103-175)||(36675193-36675265)
chr7 (103-147)||(27391883-27391926)
[»] chr2 (13 HSPs)
chr2 (108-290)||(40053167-40053349)
chr2 (94-226)||(19548134-19548267)
chr2 (103-232)||(40053454-40053579)
chr2 (102-243)||(19547868-19548010)
chr2 (103-177)||(28226337-28226411)
chr2 (103-174)||(13792581-13792652)
chr2 (103-177)||(30219965-30220039)
chr2 (103-173)||(35448703-35448773)
chr2 (105-186)||(35027905-35027986)
chr2 (103-212)||(10066540-10066640)
chr2 (103-212)||(39334421-39334530)
chr2 (102-182)||(34217537-34217616)
chr2 (97-182)||(31022896-31022981)
[»] scaffold0160 (1 HSPs)
scaffold0160 (94-243)||(27466-27615)
[»] scaffold0548 (1 HSPs)
scaffold0548 (105-226)||(4103-4225)
[»] chr6 (10 HSPs)
chr6 (105-185)||(7301376-7301456)
chr6 (103-179)||(21297215-21297291)
chr6 (103-182)||(7301663-7301742)
chr6 (103-177)||(21130141-21130215)
chr6 (124-226)||(22612273-22612375)
chr6 (103-148)||(22605368-22605413)
chr6 (103-226)||(6250084-6250212)
chr6 (102-202)||(15092058-15092158)
chr6 (103-177)||(11637805-11637879)
chr6 (108-169)||(22605112-22605173)
[»] chr5 (17 HSPs)
chr5 (103-277)||(5963683-5963856)
chr5 (103-146)||(41340279-41340322)
chr5 (103-177)||(14168934-14169008)
chr5 (105-179)||(33036223-33036297)
chr5 (103-148)||(3294929-3294974)
chr5 (103-182)||(5038446-5038525)
chr5 (102-160)||(26420849-26420907)
chr5 (103-177)||(41341456-41341529)
chr5 (103-167)||(34103554-34103618)
chr5 (146-217)||(28296071-28296142)
chr5 (103-177)||(13042539-13042613)
chr5 (103-177)||(13042996-13043070)
chr5 (103-177)||(13112537-13112611)
chr5 (103-177)||(13112992-13113066)
chr5 (103-144)||(3455876-3455917)
chr5 (103-167)||(13042712-13042776)
chr5 (103-167)||(13112710-13112774)
[»] scaffold0256 (1 HSPs)
scaffold0256 (103-182)||(13369-13448)
[»] scaffold0039 (1 HSPs)
scaffold0039 (102-221)||(29020-29141)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 43481492 - 43481775
Alignment:
Q  7 atgtcatgtttatgcaacttgtacattttttgctctaatgataaataaaaataaatgatatttgtacaattattttgagataaccttttgttgggttcaa 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43481492 atgttatgtttatgcaacttgtacattttttgctctaatgataaataaagataaatgatatttgtacaattattttgagataatcttttgttgggttcaa 43481591  T
Q  107 gtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  43481592 gtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttggatatataagagaggggacccatatacctgatgcattaagattttaggtggag 43481691  T
Q  207 atgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccggagctcctcggactcctcaacaattggta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  43481692 atgtggcgtctaagtctcttggtggttctgtacgtttaacccattgccactcccggagctcctcggactccccaacaattggta 43481775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 23162187 - 23162306
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtgg 204  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||| | |||||||||||||||| |||| | ||||||  ||||||||||||||||    
T  23162187 aagtgtgagtgattatgtcccacatcgattaggaatggaggaaacgttggacatataagagaggggactcatacatctgatt-cttaagattttaggtgg 23162285  T
Q  205 agatgtggcgtctaagtctctt 226  Q
    |||||| | |||||||||||||    
T  23162286 agatgt-gtgtctaagtctctt 23162306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 32201039 - 32201188
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||||||  ||||| |||||||| |||  |||||| ||||   |||||||||| |||    
T  32201039 tcaaatgtgagtgattatgtctcacatcgactaaaaatgaaggaaatgtttgatatacaagagaggagacatatatacttgatgccttaagattttgggt 32201138  T
Q  203 ggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattg 252  Q
    |||||||||| |||||||| |||| ||||| ||| ||||||| |||||||    
T  32201139 ggagatgtggtgtctaagtttcttagtggtcctgaacgtttagcccattg 32201188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 40195978 - 40195896
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||    
T  40195978 tcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaacgttggatatataagagaggagacccatatacatgat 40195896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 43978733 - 43978610
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||| ||| |||||||||  |   ||||| |||| |||    
T  43978733 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacattggatatataagagaggagactcatatacctattgccttaaggttttgggt 43978634  T
Q  203 ggagatgtggcgtctaagtctctt 226  Q
    |||||||||   ||||||||||||    
T  43978633 ggagatgtgatatctaagtctctt 43978610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 43755567 - 43755717
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaa-ttaagattttag 200  Q
    ||||||||| ||| |||| ||| |||||||| || ||||||| |||| | || |||||||||| |||| | |||||||||| ||||  ||||| ||||||    
T  43755567 ttcaagtgtaagtaattacgtcccacatcgattatgaatggatgaaacgatggatatataagatagggaatccatatacct-attaccttaaggttttag 43755665  T
Q  201 gtggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattg 252  Q
    ||||||||||| | ||||||||||||  || ||||| ||||||||| |||||    
T  43755666 gtggagatgtgacttctaagtctcttattgattctggacgtttaactcattg 43755717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 16871117 - 16871043
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||    ||||||||||||||||| |||||||    
T  16871117 tcaagtgtgagtgattatgtcccacatcgatttggaatggaggaaacaaagaatatataagagagggaacccata 16871043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 17732062 - 17731988
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    | |||||||||| |||| |||||||    
T  17732062 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagaaagggaacccata 17731988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 19033293 - 19033219
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    | |||||||||| |||| |||||||    
T  19033293 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagaaagggaacccata 19033219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 53595960 - 53596034
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||| ||||||||||||| ||||| |||||| ||| ||| |||||||| |||||||||||||| ||||||||    
T  53595960 tcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccata 53596034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 53596275 - 53596349
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||| ||||||||||||| ||||| |||||| ||| ||| |||||||| |||||||||||||| ||||||||    
T  53596275 tcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccata 53596349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 54017706 - 54017640
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggg 169  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    | |||||||||||||||    
T  54017706 tcaagtgtgagtgattatgtctcacatcgactaggaatggaagaaacaaaggatatataagagaggg 54017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 23161913 - 23162013
Alignment:
Q  112 agtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggagatgtg 211  Q
    ||||||||||||   ||||||||| ||||||||||||  ||  |||||||||||||| ||| |||||||| |||   |||||||||| ||||||||||||    
T  23161913 agtgattatgtcctgcatcgactaagaatggaggaaacattagatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtg 23162012  T
Q  212 g 212  Q
    |    
T  23162013 g 23162013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 43481892 - 43481939
Alignment:
Q  314 cccggattccccaacactcttaagacaagtctctcttcatctcactga 361  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||    
T  43481892 cccggattccccaacactcttaagacaagtctctcttcttcttactga 43481939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 43979027 - 43978948
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||| |||||||||||||||| ||||||||||| |||||||||||| ||||  | ||||||||||| | ||| |||||||    
T  43979027 tcaaatgtgagtgattatgtcccacatcgactaagaatggaggaaacgttgggtgtataagagaggagccccgtatacct 43978948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 23161840 - 23161913
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||||| ||  |||||||||||||| ||| ||||    
T  23161840 tcaagtgtgagtgattatgtc-cacatcgactaagaatagaggaaatattagatatataagagaggtgactcata 23161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 40196247 - 40196347
Alignment:
Q  109 gtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggagat 208  Q
    ||||||||||||||| || ||||||||| ||||||| | |  |||||||||||| | |||| | |||||||||| ||   |||||||||| |||||||||    
T  40196247 gtgagtgattatgtcccatatcgactagaaatggagtatacattgaatatataacaaagggtatccatatacctaatgccttaagattttgggtggagat 40196346  T
Q  209 g 209  Q
    |    
T  40196347 g 40196347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 42059953 - 42059845
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||||||||||||||||||||| |||| || |||  || |||||| ||||  |||||||||||||||||| | ||||||| ||   ||||| |||| | |    
T  42059953 tcaagtgtgagtgattatgtcttacattgattagacatagaggaattgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggat 42059854  T
Q  203 ggagatgtg 211  Q
    |||||||||    
T  42059853 ggagatgtg 42059845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 23162507 - 23162432
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatat 178  Q
    ||||||||||||||||||||| || ||||| || ||||||| |||| |||  | |||||||||||||||| |||||    
T  23162507 tcaagtgtgagtgattatgtcccatatcgattatgaatggatgaaacgttagacatataagagaggggacacatat 23162432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 40196217 - 40196146
Alignment:
Q  155 atatataagagaggggacccatatacctgattaattaagattttaggtggagatgtggcgtctaagtctctt 226  Q
    |||| |||||||||||||||||||||||||    ||||| |||| ||||||||| ||| |||||||||||||    
T  40196217 atatgtaagagaggggacccatatacctgacgccttaaggttttgggtggagatatggagtctaagtctctt 40196146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 16143438 - 16143512
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||| ||||  ||||||  |||| ||||||| |||||||| |||||||||||| | ||||||||    
T  16143438 tcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatatataagagacgagacccata 16143512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 48127973 - 48127899
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    |||| |||||||||||||||| |||||| ||||  ||||| ||||| |||  |||||||||||||| ||||||||    
T  48127973 tcaaatgtgagtgattatgtcacacatcaactataaatggtggaaacgtttgatatataagagaggagacccata 48127899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 53981541 - 53981585
Alignment:
Q  109 gtgagtgattatgtctcacatcgactaggaatggaggaaatgttg 153  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||    
T  53981541 gtgagtgattaagtcccacatcgactagaaatggaggaaatgttg 53981585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 103 - 268
Target Start/End: Complemental strand, 5981600 - 5981435
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||   ||||| |||| |||    
T  5981600 tcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagaggggacccatgtacctgatgccttaaggttttgggt 5981501  T
Q  203 ggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccggagctcc 268  Q
    ||| |||||| |||||||||||||  |||||||| ||||||| |||||||||||||| || |||||    
T  5981500 ggaaatgtggtgtctaagtctcttattggttctggacgtttagcccattgtcactccaggcgctcc 5981435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 262
Target Start/End: Complemental strand, 2954678 - 2954507
Alignment:
Q  92 ttttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaatt 190  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||  ||||||||| ||||||   ||    
T  2954678 ttttgttgggtttcaagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagagaagacccatatgcctgatgcctt 2954579  T
Q  191 aagattttaggtggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccgg 262  Q
    ||| |||| |||||||||||||||||||||||||||  |||| ||| |||||| |||||||| | |||||||    
T  2954578 aaggttttcggtggagatgtggcgtctaagtctcttattggtcctggacgtttgacccattgccgctcccgg 2954507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 2954384 - 2954307
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatata 179  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  2954384 ttcaagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagaggagacccatata 2954307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 5981891 - 5981769
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgatt-aattaagattttagg 201  Q
    ||||||||||| ||||||||| |||||| | ||||||||||||||| |||| ||||||||||||||||||||||| |||  |||   ||||| |||| ||    
T  5981891 tcaagtgtgagggattatgtcccacatcaattaggaatggaggaaacgttggatatataagagaggggacccataaacc--attgccttaaggttttggg 5981794  T
Q  202 tggagatgtggcgtctaagtctctt 226  Q
    ||||||||||| |||||||||||||    
T  5981793 tggagatgtggtgtctaagtctctt 5981769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 29103370 - 29103302
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacc 173  Q
    |||||||||| || |||||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  29103370 aagtgtgagtaatcatgtctcacatcgactaggaatggaggaaacgttgaaaatataagagaagggacc 29103302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 14028325 - 14028407
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    |||||||||||||||||||||  ||||||||||||||| |||||||  ||| |||||||||||||  ||| ||||||| ||||    
T  14028325 tcaagtgtgagtgattatgtcctacatcgactaggaatagaggaaacattggatatataagagagcagactcatatacttgat 14028407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 3671291 - 3671220
Alignment:
Q  111 gagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    ||||||||||||| ||||||||||||||||  |||||| |||| |||||||||||||| || ||||| ||||    
T  3671291 gagtgattatgtcccacatcgactaggaatataggaaacgttggatatataagagaggagaaccataaacct 3671220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 3670940 - 3670883
Alignment:
Q  120 tgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||| ||||||||||| |||| |||||||||||| | ||||||||    
T  3670940 tgtctcacatcgactagaaatggaggaaacgttggatatataagagatgagacccata 3670883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 4840531 - 4840600
Alignment:
Q  116 attatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    |||||||| |||||||| || ||||||||||||  ||| ||||||||||||||||||  |||||||||||    
T  4840531 attatgtcccacatcgaatatgaatggaggaaacattggatatataagagaggggacttatatacctgat 4840600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 12156816 - 12156771
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 148  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||    
T  12156816 tcaagtgtgagtgattatgtcccacatcgattaggaatggaggaaa 12156771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 22898024 - 22898170
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtgg 204  Q
    ||||||||||||||| ||  |||| ||||| | ||| ||||||| |||  || | ||||||| ||||||||||||| | |||  | ||| |||| |||||    
T  22898024 aagtgtgagtgattacgttccacaacgactggaaatagaggaaaggttagatgtgtaagagaagggacccatatacataattcctgaaggttttgggtgg 22898123  T
Q  205 agatgtggcgtctaagtctcttggtggttctgtacgtttaacccattg 252  Q
    ||||||| | || ||||||||| ||||||||| | ||||| |||||||    
T  22898124 agatgtgacatc-aagtctcttagtggttctgaaagtttagcccattg 22898170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 11576044 - 11576118
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatat 178  Q
    |||||||||||| |||||||| ||| ||||||| ||||| | |||| |||| |||||||||||||| ||| |||||    
T  11576044 tcaagtgtgagtcattatgtcccacgtcgactaagaatgaaagaaa-gttggatatataagagaggagacacatat 11576118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 43834485 - 43834646
Alignment:
Q  94 ttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaa 192  Q
    |||||||||| ||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||   ||||    
T  43834485 ttgttgggtttcaagtgtgagtgattatatctcacatcggctaagaatggatgaaatgttgaatatataagagaggggacccatatacctaatgtcttaa 43834584  T
Q  193 gattttaggtggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtc 254  Q
    | |||| | |||||||||||||||||||||||||| |||| ||  |||||||  ||||||||    
T  43834585 ggtttttgatggagatgtggcgtctaagtctcttgatggtcctagacgtttagtccattgtc 43834646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 15327856 - 15327976
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |   || || |||| |||    
T  15327856 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagaggggacccatatacctgttgtcttgaggttttgggt 15327955  T
Q  203 ggagatgtggcgtctaagtct 223  Q
    |||||||||| ||||||||||    
T  15327956 ggagatgtggtgtctaagtct 15327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 4392350 - 4392232
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||||||| ||||| ||||||||||||||||   |||||||||| | |    
T  4392350 tcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaacattggatatataacagaggagacccatatacctgatgccttaagattttggat 4392251  T
Q  203 ggagatgtggcgtctaagt 221  Q
    |||||||||| || |||||    
T  4392250 ggagatgtggtgtataagt 4392232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 4392068 - 4391963
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||| ||| |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||  ||||||||||| ||||   |||||||||| | |    
T  4392068 tcaactgtaagtgattatgtcccacatcgagtaggaatggaggaaacgttgaatatataagagagatgacccatatacatgatgtcttaagattttggat 4391969  T
Q  203 ggagat 208  Q
    ||||||    
T  4391968 ggagat 4391963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 6182374 - 6182495
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtgg 204  Q
    |||||||||||| ||||||| | || |||||||||||||| |||||||| ||||||| |||||  || | |||||||||||   |||||||||| |||||    
T  6182374 aagtgtgagtgactatgtcttatattgactaggaatggagaaaatgttggatatatatgagagaagatctatatacctgatgccttaagattttgggtgg 6182473  T
Q  205 agatgtggcgtctaagtctctt 226  Q
    |||||||| || ||||||||||    
T  6182474 agatgtggtgtataagtctctt 6182495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 26231809 - 26231684
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgatta-attaagattttaggtg 203  Q
    |||||| ||| |||||||| |||||||| ||||||| |||||||||||  |||||||||||||||||||||||||||  ||||  ||||| |||| ||||    
T  26231809 aagtgtaagtaattatgtcccacatcgattaggaattgaggaaatgtt--atatataagagaggggacccatatacc-aattaccttaaggttttgggtg 26231713  T
Q  204 gagatgtggcgtctaagtctcttggtggt 232  Q
    ||||||||| ||| ||||||||| |||||    
T  26231712 gagatgtggtgtccaagtctcttagtggt 26231684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 25294945 - 25294877
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagagggga 171  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||  ||| |||||||||||||||||    
T  25294945 tcaagtgtgagtgattatgtcccacattggctaggaatggaggaaacattggatatataagagagggga 25294877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 31973493 - 31973398
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagatttt 198  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||  |||  ||||||||||||||  || |||||||| |||   ||||||||||    
T  31973493 tcaagtgtgagtgattatgtctcacaccgactagaaatggaggaaccgttacatatataagagaggatacacatatacccgatgccttaagatttt 31973398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 27686680 - 27686618
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagag 167  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||  |||||||||||||    
T  27686680 aagtgtgagtgattatgttccacatcgactaggaatggaggaaacattagatatataagagag 27686618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 5821725 - 5821790
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagag 167  Q
    |||||||||||||||||||||||||||||||    ||||||||||||  ||| |||||||||||||    
T  5821725 ttcaagtgtgagtgattatgtctcacatcgatcgagaatggaggaaacattggatatataagagag 5821790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 43834290 - 43834391
Alignment:
Q  189 ttaagattttaggtggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccggagctcctcggactcctcaacaattgg 288  Q
    |||||||||| | ||||||||||||||||||||||||| || ||| |  ||||||| || |||||| ||||||| ||||| |  ||||| |||||| |||    
T  43834290 ttaagattttggatggagatgtggcgtctaagtctcttagtagtttttaacgtttagccaattgtcgctcccggcgctcccctaactccccaacaactgg 43834389  T
Q  289 ta 290  Q
    ||    
T  43834390 ta 43834391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 11199925 - 11200037
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtgg 204  Q
    ||||||||||| ||| ||||||||| | ||| |||| |   |||||||| |||||||||||||| ||| ||||| ||| ||   ||||| |||| |||||    
T  11199925 aagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaaggttttgggtgg 11200024  T
Q  205 agatgtggcgtct 217  Q
    |||||||||||||    
T  11200025 agatgtggcgtct 11200037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 12466283 - 12466360
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatac 180  Q
    |||||||| |||||||||||| |||||| ||||| ||||||| ||| |||| ||||||| ||||| || || ||||||    
T  12466283 tcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatatacgagagtgggcctatatac 12466360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 31739615 - 31739675
Alignment:
Q  125 cacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    ||||||||||| | ||||| ||||||||||||||||| || ||| ||||||||||| ||||    
T  31739615 cacatcgactatggatggatgaaatgttgaatatatatgataggtgacccatatacatgat 31739675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 34665963 - 34665908
Alignment:
Q  107 gtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataa 162  Q
    |||||||||||||| || |||||||||||| ||| |||||||||||  ||||||||    
T  34665963 gtgtgagtgattatatcccacatcgactagaaattgaggaaatgttagatatataa 34665908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 4753091 - 4753041
Alignment:
Q  134 taggaatggaggaaatgttgaatatataagagaggggacccatatacctga 184  Q
    |||||||| ||||||  ||| |||||||||||||||||||||| |||||||    
T  4753091 taggaatgaaggaaacattggatatataagagaggggacccatttacctga 4753041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 25994988 - 25994954
Alignment:
Q  55 aaataaatgatatttgtacaattattttgagataa 89  Q
    ||||||||||||||||||||||||||||| |||||    
T  25994988 aaataaatgatatttgtacaattattttgtgataa 25994954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 39030133 - 39030202
Alignment:
Q  155 atatataagagaggggacccatatacctgattaattaagattttaggtggagatgtggcgtctaagtctc 224  Q
    |||||||| ||||| | ||||||||||| ||   ||||| |||||||||||||||||| |||| ||||||    
T  39030133 atatataaaagaggtgtcccatatacctaatgtcttaaggttttaggtggagatgtggtgtctgagtctc 39030202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 34665850 - 34665814
Alignment:
Q  190 taagattttaggtggagatgtggcgtctaagtctctt 226  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  34665850 taagattttaggtagagatgtggcgtctaagcctctt 34665814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 105 - 290
Target Start/End: Original strand, 47680623 - 47680808
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtgg 204  Q
    ||||||||||||||||||| |||||||| ||  |||||||||||  ||||||||||| |||||| ||||||||||||||||   ||||| |||| |||||    
T  47680623 aagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaatatatatgagaggagacccatatacctgatgccttaaggttttgggtgg 47680722  T
Q  205 agatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccggagctcctcggactcctcaacaattggta 290  Q
    |||||||| |||||||||||||  |||| ||| ||||||||| ||||||| ||||||  ||||||| ||| || |||||| |||||    
T  47680723 agatgtggtgtctaagtctcttattggtcctggacgtttaactcattgtcgctcccgatgctcctcagacaccccaacaactggta 47680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 232
Target Start/End: Complemental strand, 11307448 - 11307319
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||||||||| ||| ||||||||||||| ||||| |||||||||||  ||| |||||||||||||||||| | ||||||||||   ||||  |||| |||    
T  11307448 tcaagtgtgactgactatgtctcacatcaactagaaatggaggaaaccttggatatataagagaggggacacgtatacctgatgccttaatgttttgggt 11307349  T
Q  203 ggagatgtggcgtctaagtctcttggtggt 232  Q
    |||||||||| ||||||||||||| |||||    
T  11307348 ggagatgtggtgtctaagtctcttagtggt 11307319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 11307735 - 11307614
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtgg 204  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||| |||||| ||||||||||| ||||||||| ||   ||||  |||| |||||    
T  11307735 aagtgtgagtgattgtgtctcacatcgactataaatggaggaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtgg 11307636  T
Q  205 agatgtggcgtctaagtctctt 226  Q
    |||||||| |||||||| ||||    
T  11307635 agatgtggtgtctaagtgtctt 11307614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 261
Target Start/End: Original strand, 8445845 - 8446013
Alignment:
Q  94 ttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaa 192  Q
    |||||||||| ||||| | |||||||||||| ||||||| |    |||| ||||||||||| ||||||||||||| |||| ||||||| ||||   ||||    
T  8445845 ttgttgggtttcaagtctaagtgattatgtcccacatcggcacacaatgaaggaaatgttggatatataagagagaggacacatatacatgatgccttaa 8445944  T
Q  193 gattttaggtggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccg 261  Q
    | ||||||||||||||||||||||||||||||||  | || ||| | ||||||||||||| | ||||||    
T  8445945 ggttttaggtggagatgtggcgtctaagtctcttatttgtcctggaagtttaacccattgcccctcccg 8446013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 10396131 - 10396205
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||    
T  10396131 tcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttgaatatataagagagaagacccata 10396205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 102 - 290
Target Start/End: Complemental strand, 26473759 - 26473573
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttagg 201  Q
    ||||| |||||||||||||  | |||||||| ||||||||||| |||  ||| ||||||||||||||| || ||||||||||||   ||||| |||||||    
T  26473759 ttcaactgtgagtgattat--cccacatcgattaggaatggagaaaacattggatatataagagaggg-actcatatacctgatgttttaaggttttagg 26473663  T
Q  202 tggagatgtggcgtctaagtctctt-ggtggttctgtacgtttaacccattgtcactcccggagctcctcggactcctcaacaattggta 290  Q
    |||||| |||| |||||||||||||    ||| ||| ||||||| ||||||| ||||||||| ||||| || ||||| || |||||||||    
T  26473662 tggagaagtggtgtctaagtctcttatagggtcctggacgtttagcccattggcactcccggcgctccccgaactccccagcaattggta 26473573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 10396416 - 10396490
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    |||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||| ||||||||    
T  10396416 tcaagtgtgagtgattatgtctcatattgactagaaatggaggaaatgttggatatataagagaggagacccata 10396490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 11197227 - 11197300
Alignment:
Q  104 caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||    
T  11197227 caagtgtgagtgattatgcctcacatcgactagaaatggaggaaacgttggatatataagagaggagacccata 11197300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 51681537 - 51681616
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacc 181  Q
    ||||||||| |||||||||||| ||||| |||||||||| ||||||||||  ||||||||||||||||||| ||||||||    
T  51681537 ttcaagtgtaagtgattatgtcccacattgactaggaattgaggaaatgtgaaatatataagagaggggactcatatacc 51681616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 51681251 - 51681373
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagagggg-acccatatacctgattaattaagattttagg 201  Q
    ||||||||| ||||||||||||||  |||||||||||||||| |||  ||| |||||||||| ||||| |||||||||||  ||   ||||| |||| ||    
T  51681251 tcaagtgtgggtgattatgtctca--tcgactaggaatggagaaaacattggatatataagaaagggggacccatataccatataccttaaggttttggg 51681348  T
Q  202 tggagatgtggcgtctaagtctctt 226  Q
    ||||||||||| |||||||||||||    
T  51681349 tggagatgtggtgtctaagtctctt 51681373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 53468155 - 53468082
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||||    
T  53468155 tcaagtgtgagtgataatgtctcacatcgattagaaatggagcaaatgttgaatatataa-agaggagacccata 53468082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 1868051 - 1868125
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||     ||||||||||||||| |||||||    
T  1868051 tcaagtgtgagtgattatgtcccacatcgactaagaatggaggaaataaatgatatataagagagggaacccata 1868125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 48635204 - 48635126
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatac 180  Q
    |||||||||||||||||||||| ||||| || ||  |||||||||||| ||||| |||||||||||| ||| |||||||    
T  48635204 ttcaagtgtgagtgattatgtcccacattgattataaatggaggaaatattgaacatataagagaggagactcatatac 48635126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 26080313 - 26080429
Alignment:
Q  110 tgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggagatg 209  Q
    |||||||||||||| ||||| || ||| ||| ||| ||||  ||||||||||||| ||| ||  | ||||||||||   ||||||||||||||||| | |    
T  26080313 tgagtgattatgtcccacattgattagaaattgagaaaatactgaatatataagataggagattcttatacctgatcctttaagattttaggtggaaaag 26080412  T
Q  210 tggcgtctaagtctctt 226  Q
    || ||||||||||||||    
T  26080413 tgacgtctaagtctctt 26080429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 34946562 - 34946481
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    ||||||||| ||||| |||||||||||||||||| ||||||| ||| |||| |||| ||||||| | |||||||| |||||||    
T  34946562 tcaagtgtg-gtgataatgtctcacatcgactagaaatggagcaaacgttggatatttaagagaagagacccataaacctgat 34946481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 27000985 - 27000864
Alignment:
Q  94 ttgttgggttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaa----t 189  Q
    |||||||||||||||||||||| ||| |||||| |||||||| ||| ||   |||||||| |||||||||| ||  |||||||||| || |||||    |    
T  27000985 ttgttgggttcaagtgtgagtggtta-gtctcatatcgactatgaacgggataaatgttggatatataagaaagatgacccatataactaattaatgcct 27000887  T
Q  190 taagattttaggtggagatgtgg 212  Q
    ||| ||||| |||||||||||||    
T  27000886 taaaattttgggtggagatgtgg 27000864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 2917572 - 2917509
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagaga 166  Q
    |||||| |||||||| ||||||||| |||||||  ||||||| |||||||||||||| ||||||    
T  2917572 tcaagtctgagtgatgatgtctcacgtcgactataaatggagtaaatgttgaatatacaagaga 2917509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 4468933 - 4468988
Alignment:
Q  107 gtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataa 162  Q
    |||||| |||||||||| |||||||||||  ||| |||||| ||||||||||||||    
T  4468933 gtgtgaatgattatgtcccacatcgactaacaattgaggaattgttgaatatataa 4468988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 33339023 - 33339110
Alignment:
Q  125 cacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggagatgtgg 212  Q
    |||||| |||||||||||||  ||||||||||||||| ||||||  |  ||||||||| |||  || || |||||||| |||||||||    
T  33339023 cacatcaactaggaatggagagaatgttgaatatatatgagaggatattcatatacctaatttcttgaggttttaggttgagatgtgg 33339110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 34946269 - 34946204
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagagg 168  Q
    ||||||||||||||| ||||| |||||| ||| | ||||||| ||| ||||||||| |||| ||||    
T  34946269 tcaagtgtgagtgataatgtcccacatcaacttgaaatggagcaaacgttgaatatttaagggagg 34946204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 922424 - 922492
Alignment:
Q  109 gtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||| ||||||| |||||||||||| |||| || ||| |||  ||||| |||||||| ||||||||    
T  922424 gtgagtgtttatgtcccacatcgactagaaatgaagcaaacgttagatatagaagagaggagacccata 922492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 11776506 - 11776382
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttagg 201  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||||||||||||| | ||   ||||| |||| ||    
T  11776506 ttcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatataagagaggggacccatatacataataccttaaggttttggg 11776407  T
Q  202 tggagatgtggcgtctaagtctctt 226  Q
    |||||||||||| ||||||||||||    
T  11776406 tggagatgtggcatctaagtctctt 11776382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 2463159 - 2463236
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||| ||||||||||||  ||||||||||||||    
T  2463159 aagtgtgagtgattatgtctcacatcgactagaaaatgaggaaatgttggatatataagagaatggacccatatacct 2463236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 45100183 - 45100307
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttagg 201  Q
    |||||||||||||||||||||  ||||| ||||||||||  || ||||||||||||||||||||||  ||| |||||| || ||   ||||  ||||||     
T  45100183 ttcaagtgtgagtgattatgttccacattgactaggaattaagaaaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttaga 45100282  T
Q  202 tggagatgtggcgtctaagtctctt 226  Q
    ||||||||||| |||||||||||||    
T  45100283 tggagatgtggtgtctaagtctctt 45100307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 35589881 - 35589748
Alignment:
Q  94 ttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaa 192  Q
    |||||||||| ||||||||||||||||||||||||||| | ||||||| |   |||||||| |||||||| ||||| ||  ||||| | ||||   ||||    
T  35589881 ttgttgggtttcaagtgtgagtgattatgtctcacatcaattaggaattgcaaaaatgttggatatataaaagaggagatacatatgcgtgatgccttaa 35589782  T
Q  193 gattttaggtggagatgtggcgtctaagtctctt 226  Q
    |||||||| | ||||||||| |||||||||||||    
T  35589781 gattttagatcgagatgtggtgtctaagtctctt 35589748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 2463445 - 2463527
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    |||||||||||| |||||||| ||||| |  ||| |||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  2463445 tcaagtgtgagtaattatgtcccacattggttagaaatggaggaaatattggatatataagagaggggacacatatacctgat 2463527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 27597985 - 27598059
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||| |||||||||||||||||  ||| ||| ||| |||| |||||||||||||| ||||||||    
T  27597985 tcaagtgtgagtgataatgtctcacatcgactataaattgagcaaacgttggatatataagagaggagacccata 27598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 23578172 - 23578085
Alignment:
Q  94 ttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatac 180  Q
    |||||||||| || ||||||||||||| ||| |||||||| ||| ||||||| ||| |||| |||||||||||||| ||| |||||||    
T  23578172 ttgttgggtttcatgtgtgagtgattaagtcccacatcgagtagaaatggagaaaacgttggatatataagagaggtgacacatatac 23578085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 48071386 - 48071465
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    | ||||||||||||||| || |||| ||||    
T  48071386 tcaagtgtcagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagagggaactcataaacct 48071465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 11776232 - 11776174
Alignment:
Q  94 ttgttggg-ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgt 151  Q
    |||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  11776232 ttgttgggattcaagtgtgaatgattatgtcccacatcaactaggaatggaggaaatgt 11776174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 212
Target Start/End: Complemental strand, 33730219 - 33730101
Alignment:
Q  94 ttgttgggttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaag 193  Q
    ||||| |||||||||| ||||| ||| ||| ||||||||||| ||||||   |||||||| ||||| |||||||| |||||||| | || ||  ||||||    
T  33730219 ttgttaggttcaagtgcgagtggttaagtcccacatcgactatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaag 33730120  T
Q  194 attttaggtggagatgtgg 212  Q
     |||| | |||||||||||    
T  33730119 gttttggatggagatgtgg 33730101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 7631377 - 7631284
Alignment:
Q  91 cttttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagagggga-cccatatacct 182  Q
    ||||||||||||| |||||||||||  ||| ||| ||||||||||   ||||||| |||||||| |||||||||||||| || |||||||||||    
T  7631377 cttttgttgggtttcaagtgtgagtagttaagtcccacatcgactgaaaatggagaaaatgttggatatataagagaggagaccccatatacct 7631284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 21416299 - 21416225
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| |||||| |||||  |||||  |||  ||| |||||||||||||| ||||||||    
T  21416299 tcaagtgtgagtgattatgtcccacatcaactagacatggaacaaaaattggatatataagagaggagacccata 21416225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 28445289 - 28445216
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    |||| |||||||||| ||||| ||||||||||| |||||||| |||| ||| |||||||||||||  ||||||||    
T  28445289 tcaactgtgagtgataatgtcccacatcgacta-gaatggagcaaatattggatatataagagagaagacccata 28445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 22561956 - 22562021
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagagggg 170  Q
    |||||||||||||||||||  | ||||| ||||||||||||||| |||  |||||||| |||||||    
T  22561956 aagtgtgagtgattatgtcatatatcgaataggaatggaggaaacgttagatatataacagagggg 22562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 5862841 - 5862765
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatata 179  Q
    |||||||||||||||||| || || || || ||| || ||||||||||||| |||||||||||| |  |||||||||    
T  5862841 tcaagtgtgagtgattatatcccaaattgattagaaaaggaggaaatgttggatatataagagatgatacccatata 5862765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 36675193 - 36675265
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggaccca 175  Q
    |||| |||||||||| ||||| |||||||||||  ||||||| ||| |||| |||||||||||| | ||||||    
T  36675193 tcaaatgtgagtgataatgtcccacatcgactataaatggagaaaacgttggatatataagagatgagaccca 36675265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 27391926 - 27391883
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaa 147  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||    
T  27391926 tcaagtgtgagtgattatgtcccacatc-aataggaatggaggaa 27391883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 290
Target Start/End: Original strand, 40053167 - 40053349
Alignment:
Q  108 tgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggaga 207  Q
    ||||||| ||||||| | |||||| |||  ||||||| |||||||  || ||||||||||||||||||||||| ||||   ||||| |||||||||||||    
T  40053167 tgtgagtaattatgttttacatcggctaaaaatggagaaaatgttagatttataagagaggggacccatatacatgatgtcttaaggttttaggtggaga 40053266  T
Q  208 tgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccggagctcctcggactcctcaacaattggta 290  Q
    |||||||||||||||||||||||||  || ||||||| | ||||| | ||||||  |||||  ||||||| | ||||||||||    
T  40053267 tgtggcgtctaagtctcttggtggtcttgaacgtttagctcattgccgctcccgtcgctcccaggactcccctacaattggta 40053349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 19548134 - 19548267
Alignment:
Q  94 ttgttgggtt-caagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaa 192  Q
    |||||||||| |||| ||||||| ||||||| |||||||||||| ||| |||||||||||| |||||||||||||| |||||||||| || ||   ||||    
T  19548134 ttgttgggtttcaagcgtgagtggttatgtcccacatcgactagaaatagaggaaatgttggatatataagagaggagacccatatatctaatgtcttaa 19548233  T
Q  193 gattttaggtggagatgtggcgtctaagtctctt 226  Q
    | |||| ||||||||||||| || ||||||||||    
T  19548234 ggttttgggtggagatgtggtgtataagtctctt 19548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 40053454 - 40053579
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||||||||| | |||||||| ||||||| |||  |||||||||||||||| ||||||||||||||| |||||||||| ||||    | ||| |||||||    
T  40053454 tcaagtgtgaataattatgtcccacatcggctaaaaatggaggaaatgttggatatataagagagggaacccatatacttgat---gttaga-tttaggt 40053549  T
Q  203 ggagatgtggcgtctaagtctcttggtggt 232  Q
     |||||||||||||||||||||||||||||    
T  40053550 agagatgtggcgtctaagtctcttggtggt 40053579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 243
Target Start/End: Original strand, 19547868 - 19548010
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggg-gacccatatacctgattaattaagattttag 200  Q
    ||||||||||||| ||||||||| | ||||||||| |||||| ||||||||| ||||||||||||||| |||| |||||| | ||   ||||| ||||      
T  19547868 ttcaagtgtgagtaattatgtcttatatcgactagaaatggaagaaatgttggatatataagagagggagacctatatacataatgctttaaggttttgt 19547967  T
Q  201 gtggagatgtggcgtctaagtctcttggtggttctgtacgttt 243  Q
    ||||| |||||| |||||| | |||| ||||| ||| ||||||    
T  19547968 gtggaaatgtggtgtctaaatatcttagtggtcctggacgttt 19548010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 28226337 - 28226411
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||| | ||||| |||||||||||| ||||||||||| |||| |||||||||||||| ||||||||    
T  28226337 tcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttggatatataagagaggagacccata 28226411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 13792652 - 13792581
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggaccc 174  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||| ||  |||||||||||||| |||||    
T  13792652 tcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatataagagaggagaccc 13792581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 30220039 - 30219965
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||| ||||||||| |||||||||||| | |||||||||||||| |||  ||||||||| ||||||||    
T  30220039 tcaagtgtgagcgattatgtcccacatcgactagaactggaggaaatgttggatacttaagagaggagacccata 30219965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 35448773 - 35448703
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacc 173  Q
    |||||||||  ||||||||||||||||||||||| ||| ||||||| |||  |||||||||||||| ||||    
T  35448773 tcaagtgtgtatgattatgtctcacatcgactagaaatagaggaaacgtttgatatataagagaggagacc 35448703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 35027905 - 35027986
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgatt 186  Q
    |||||| |||||||||||  |||||||| || ||||  ||||||||||| |||||||||||||| |||  ||||||||||||    
T  35027905 aagtgttagtgattatgttccacatcgattaagaataaaggaaatgttggatatataagagaggagacttatatacctgatt 35027986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 10066540 - 10066640
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    |||||||||||||||||| |||||||||| ||||         |||||||| |||||||||| ||| || |||||||||| ||   |||||||||| |||    
T  10066540 tcaagtgtgagtgattatatctcacatcggctag---------aaatgttggatatataagataggagatccatatacctaatgccttaagattttgggt 10066630  T
Q  203 ggagatgtgg 212  Q
    ||||||||||    
T  10066631 ggagatgtgg 10066640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 39334530 - 39334421
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    ||||||||||||||||| |||  ||||| ||||  ||| |||||||||||| ||||| || ||||| || ||||||  || ||   |||| |||||||||    
T  39334530 tcaagtgtgagtgattaagtcctacatctactaaaaatcgaggaaatgttggatataaaaaagaggagatccatatttctaatgccttaaaattttaggt 39334431  T
Q  203 ggagatgtgg 212  Q
    ||||||||||    
T  39334430 ggagatgtgg 39334421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 34217537 - 34217616
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||||||||||||| |||  || ||||||| |||||||||||||||||| || |||||||||| ||| |||  ||||||||    
T  34217537 ttcaagtgtgagtggttaa-tcccacatcggctaggaatggaggaaatggtggatatataagataggtgacttatatacct 34217616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 31022981 - 31022896
Alignment:
Q  97 ttgggttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    ||||||| ||||||||||| |||  |||||||||| ||| ||||| |  |||||||| ||||| |||||||  || ||||||||||    
T  31022981 ttgggtttaagtgtgagtggttaaatctcacatcgtctatgaatgaataaaatgttggatatacaagagagttgaaccatatacct 31022896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 94 - 243
Target Start/End: Complemental strand, 27615 - 27466
Alignment:
Q  94 ttgttgggttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaag 193  Q
    |||||||||| ||||||||||||||||||   ||||||||||| |||||| ||||  ||||||| |||||||||| ||||||||||| ||||   |||||    
T  27615 ttgttgggtttaagtgtgagtgattatgttctacatcgactagaaatggaagaaacattgaatacataagagaggagacccatatacttgatgtcttaag 27516  T
Q  194 attttaggtggagatgtggcgtctaagtctcttggtggttctgtacgttt 243  Q
    |||||||||||||||||| | ||||||||||||  |||| ||| ||||||    
T  27515 attttaggtggagatgtgacatctaagtctcttattggtcctggacgttt 27466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 4225 - 4103
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggagg-aaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtg 203  Q
    |||||||||||||| ||||||||||||||||  |||||||| |||||||| |||||| ||||||||||| ||||||||| ||   ||||  |||| ||||    
T  4225 aagtgtgagtgattgtgtctcacatcgactataaatggaggaaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtg 4126  T
Q  204 gagatgtggcgtctaagtctctt 226  Q
    ||||||||| |||||||| ||||    
T  4125 gagatgtggtgtctaagtgtctt 4103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 7301456 - 7301376
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgat 185  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||| ||||||| ||||||| ||||    
T  7301456 aagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatataagaaaggggacacatatacatgat 7301376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 21297291 - 21297215
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatata 179  Q
    |||||||||||||||| |||| |||||||||||||||||||  |||||||| || || ||||||| |||||||||||    
T  21297291 tcaagtgtgagtgattgtgtcccacatcgactaggaatggaaaaaatgttggatgtacaagagagcggacccatata 21297215  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 7301742 - 7301663
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||||||||||| |||||||| |||||||||||  ||||||| |||||||  |||||||| ||||||||| |||||||||    
T  7301742 tcaagtgtgagtaattatgtcccacatcgactaaaaatggagaaaatgttagatatataaaagaggggacacatatacct 7301663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 21130215 - 21130141
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||      ||||||||||||||| |||||||    
T  21130215 tcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaaaagatatataagagagggaacccata 21130141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 22612375 - 22612273
Alignment:
Q  124 tcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggagatgtggcgtctaagtct 223  Q
    ||||||||| ||||||||| ||||| |||| |||||||||||||||  | | ||||| ||||   ||||| |||| |||| |||||||| ||||||||||    
T  22612375 tcacatcgattaggaatggtggaaacgttggatatataagagagggagctcgtatacttgatgccttaaggttttgggtgtagatgtggtgtctaagtct 22612276  T
Q  224 ctt 226  Q
    |||    
T  22612275 ctt 22612273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 22605413 - 22605368
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 148  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  22605413 tcaagtgtgagtgattatgttccacatcgactaggaatggaggaaa 22605368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 6250084 - 6250212
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaat-----atataagagaggggacccatatacctgattaattaagattt 197  Q
    ||||||||||||||||||||| |||||||| ||   ||||||||||||||| ||     |||||| |||||| || ||||||||| ||   ||||  |||    
T  6250084 tcaagtgtgagtgattatgtcccacatcgattaaacatggaggaaatgttggatatataatataacagagggaacacatatacctaatggcttaaagttt 6250183  T
Q  198 taggtggagatgtggcgtctaagtctctt 226  Q
    ||||||||||||||| ||| || ||||||    
T  6250184 taggtggagatgtggtgtccaactctctt 6250212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 15092058 - 15092158
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttagg 201  Q
    |||||||||||||| |||  |  |||||||| ||| ||| ||| |||||||| ||||||| ||||||||| |||||||||||||   ||||| |||||||    
T  15092058 ttcaagtgtgagtggttaaataccacatcgattagaaattgagaaaatgttggatatatacgagaggggatccatatacctgatgctttaaggttttagg 15092157  T
Q  202 t 202  Q
    |    
T  15092158 t 15092158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 11637879 - 11637805
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||| |||||  ||||||||||| | || || |||  ||||||||||||||||||  |||||||    
T  11637879 tcaagtgtgagtgataatgtccaacatcgactagaagtgaagcaaacattgaatatataagagaggatacccata 11637805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 22605173 - 22605112
Alignment:
Q  108 tgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggg 169  Q
    |||| ||||||||||| ||||||||||||||| ||||||||    | |||||||||||||||    
T  22605173 tgtgggtgattatgtcccacatcgactaggaacggaggaaacaaaggatatataagagaggg 22605112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 277
Target Start/End: Original strand, 5963683 - 5963856
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggt 202  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    | ||||||||||||||| ||||||| | |||||   ||||| |||| |||    
T  5963683 tcaagtgtgtgtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagagggaacccatagatctgatgccttaaggttttgggt 5963782  T
Q  203 -ggagatgtggcgtctaagtctcttggtggttctgtacgtttaacccattgtcactcccggagctcctcggactcc 277  Q
      ||| ||||| || ||||||||||  |||| ||| |||||| |||||||| | ||||||| ||||| ||||||||    
T  5963783 aagag-tgtggtgtttaagtctctt-atggtcctggacgtttgacccattgccgctcccggggctccccggactcc 5963856  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 41340279 - 41340322
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggagga 146  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  41340279 tcaagtgtgagtgattatgtcccacatcgactaggaatggagga 41340322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 14168934 - 14169008
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||    | ||||||||||||||| |||||||    
T  14168934 tcaagtgtaagggattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagagggaacccata 14169008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 33036297 - 33036223
Alignment:
Q  105 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatata 179  Q
    ||||||||| |||||||| ||||||||| ||| |||||||||||||  | | ||||||||||||||| |||||||    
T  33036297 aagtgtgagggattatgtttcacatcgattagaaatggaggaaatggaggaaatataagagaggggatccatata 33036223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 3294974 - 3294929
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 148  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  3294974 tcaagtgtgagtgattatgtcccatatcgactaggaatggaggaaa 3294929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 5038446 - 5038525
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||||||||||| |||||||||||| |   |||| ||||||||||| ||||||||||||| |||| | || |||||||||    
T  5038446 tcaagtgtgagtaattatgtctcacgtaagctagaaatggaggaaacgttgaatatataatagagagaactcatatacct 5038525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 26420907 - 26420849
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatat 160  Q
    |||||||||||||  ||| ||| |||||||||||| |||||||||||||||| ||||||    
T  26420907 ttcaagtgtgagtagttaagtcccacatcgactagaaatggaggaaatgttggatatat 26420849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 41341456 - 41341529
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |    | ||||||||||||||| |||||||    
T  41341456 tcaagtgtgagtgattatgtcccacat-gactaggaatggaggagacaaaggatatataagagagggaacccata 41341529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 34103554 - 34103618
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagag 167  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||||   | |||||||||||||    
T  34103554 tcaagtgtgagtgattatgttccacatcgaatagaaatggaggaaataaaggatatataagagag 34103618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 28296142 - 28296071
Alignment:
Q  146 aaatgttgaatatataagagaggggacccatatacctgattaattaagattttaggtggagatgtggcgtct 217  Q
    |||| |||||| ||||||||||| ||||||||||||| ||   ||||| |||| ||||||||||||| ||||    
T  28296142 aaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtct 28296071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 13042539 - 13042613
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||| || || |||||||||||| ||| ||| |||  ||  |||||||||||||| ||||||||    
T  13042539 tcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagaggagacccata 13042613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 13042996 - 13043070
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||| ||||||||| || || |||||||||||| ||| ||| |||  ||| |||||||||||||| ||||||||    
T  13042996 tcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagaggagacccata 13043070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 13112537 - 13112611
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||||||||||||| || || |||||||||||| ||| ||| |||  ||  |||||||||||||| ||||||||    
T  13112537 tcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagatatataagagaggagacccata 13112611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 13112992 - 13113066
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccata 177  Q
    ||||| ||||||||| || || |||||||||||| ||| ||| |||  ||| |||||||||||||| ||||||||    
T  13112992 tcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagaggagacccata 13113066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 3455876 - 3455917
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggag 144  Q
    |||||||||||||||| ||||||||||||||||  |||||||    
T  3455876 tcaagtgtgagtgattgtgtctcacatcgactataaatggag 3455917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 13042712 - 13042776
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagag 167  Q
    ||||||||||||||||||||  |||||| ||||| ||||||| |||  ||  |||||||||||||    
T  13042712 tcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagagag 13042776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 13112710 - 13112774
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagag 167  Q
    ||||||||||||||||||||  |||||| ||||| ||||||| |||  ||  |||||||||||||    
T  13112710 tcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataagagag 13112774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 13369 - 13448
Alignment:
Q  103 tcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatatataagagaggggacccatatacct 182  Q
    |||||||||| |||||| ||| |||||||||||| |||||||||||||||  || || |||||||| |||||||||||||    
T  13369 tcaagtgtgaatgattaagtcacacatcgactagaaatggaggaaatgttagatttaaaagagaggtgacccatatacct 13448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 29020 - 29141
Alignment:
Q  102 ttcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttgaatat--ataagagaggggacccatatacctgattaattaagatttta 199  Q
    ||||| ||||| |||||||||  |||||||||||| ||  ||  |||||||| ||||  |||||||||||||| |||||| |||||   ||||||||||     
T  29020 ttcaaatgtgaatgattatgttccacatcgactagaaaatgaaaaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttg 29119  T
Q  200 ggtggagatgtggcgtctaagt 221  Q
    ||||||||||||| ||||||||    
T  29120 ggtggagatgtggtgtctaagt 29141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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