View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20189_low_7 (Length: 251)
Name: NF20189_low_7
Description: NF20189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20189_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 14761868 - 14762100
Alignment:
| Q |
1 |
agatggagagcatcatgaactaacagtaaattgatgatcatcttcatctgaatcattgttcctattcctgatatctgtttctcttctaccatcacaaatc |
100 |
Q |
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| T |
14761868 |
agatggagagcatcatgaactaacagtaaattgatgatcatcttcatctgaatcattgttcctattcctgatatctgtttctcttctaccatcacaaatc |
14761967 |
T |
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| Q |
101 |
tgaaacaaaccgttcaaaaaatacatctctcacaaaattaatatcgcatgacgtgagcataccaataacgaatcacagataaccaacctgaacagagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14761968 |
tgaaacaaaccgttcaaaaaatacatctctcacaaaattaatatcgcatgacgtgaggataccaataacgaatcacagataaccaacctgaacagagttt |
14762067 |
T |
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| Q |
201 |
gcaataaaagctaggtgataggagagatctctg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
14762068 |
gcaataaaagctaggtgataggagagatctctg |
14762100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 37648665 - 37648756
Alignment:
| Q |
18 |
aactaacagtaaattgatgatcatcttcatctgaatcattgttcctattcctgatatctgtttctcttctaccatcacaaatctgaaacaaa |
109 |
Q |
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|||| ||||| ||||| ||||||||||||| ||||| || || ||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
37648665 |
aacttacagtgaattgcagatcatcttcatcggaatccttctttctattcctgatgtctatttctcttctaccatcacaaatctggaacaaa |
37648756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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