View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_10 (Length: 557)
Name: NF2018_high_10
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 463 - 551
Target Start/End: Original strand, 4794200 - 4794288
Alignment:
| Q |
463 |
ataactcatagtcgcttggttcttaattctcttttgtacgtggtaagagtcggggtacaaggtaaataacacttgttagtattatctac |
551 |
Q |
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| T |
4794200 |
ataactcatagtcgcttggttcttaattctcttttgtacgtggtaagagtcggggtacaaggtaaataacacttgttagtattatctac |
4794288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 4804081 - 4804335
Alignment:
| Q |
19 |
tatcgacgacaactacttgaatggatggacatcttgatgcaatgactgtcattgttggaccctcccctacatatccagcaccaatgcagcaaatctt-ac |
117 |
Q |
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| T |
4804081 |
tatcaacgacagctgcttgaatggatggacatctaaatacaatgactgttattattggac--tcccttacatatctagtatcaatgcagcaaatcttcac |
4804178 |
T |
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| Q |
118 |
cattttttcctttcctaacatatccacactggtgttaagatgtatcagtaaatacaattatccaacgaatgctattttgatcgttttaaattacagtcac |
217 |
Q |
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| T |
4804179 |
cattctttc-tttcctaacctatccacactggtgttcaaatgtattagtgaatacaattatggagcaaaagctaatttggtcgttttaa-tagcaatcac |
4804276 |
T |
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| Q |
218 |
agtgaagttttggtcacgttttgatccttattattgtggataattgtgatcaaatgcgg |
276 |
Q |
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| T |
4804277 |
gatgaagtttttgtcacgttttgatcgttaatattgtggagaatcgtgaccaaatgcgg |
4804335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 407 - 529
Target Start/End: Original strand, 4842372 - 4842494
Alignment:
| Q |
407 |
atataacacatgcaatcattgataacgattaggtgaaaaacttccaggtctacaagataactcatagtcgcttggttcttaattctcttttgtacgtggt |
506 |
Q |
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| T |
4842372 |
atataacacatgcaatcattaataacaattaggtgaaaaacttccaggtctataagatgactcatagtcacttaattcttaattcttttttgtgcgtggt |
4842471 |
T |
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| Q |
507 |
aagagtcggggtacaaggtaaat |
529 |
Q |
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| T |
4842472 |
acgagtctggatacaagctaaat |
4842494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 164 - 276
Target Start/End: Original strand, 4805366 - 4805478
Alignment:
| Q |
164 |
agtaaatacaattatccaacgaatgctattttgatcgttttaaattacagtcacagtgaagttttggtcacgttttgatccttattattgtggataattg |
263 |
Q |
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| T |
4805366 |
agtaaatacaataatgcaacgaaagatagtttgatcgttttaaataatagtcaaagtgaagttttggtcacattttgatccttactattgtggagaactg |
4805465 |
T |
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| Q |
264 |
tgatcaaatgcgg |
276 |
Q |
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| T |
4805466 |
tgatcaaatgcgg |
4805478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 169 - 332
Target Start/End: Original strand, 4842058 - 4842214
Alignment:
| Q |
169 |
atacaattatccaacgaatgctattttgatcgttttaaattacagtcacagtgaagttttggtcacgttttgatccttattattgtggataattgtgatc |
268 |
Q |
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| T |
4842058 |
atacaagtatgcaatgaatgctattttgatcgttttaaataacaatcacagtgaagttttggtc------taatccttattattct-gagagttgtgatc |
4842150 |
T |
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| Q |
269 |
aaatgcggcctatgccgccttaatagtgatcgcattgtagtttcacggcacatatgatggtcat |
332 |
Q |
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| T |
4842151 |
aaatgtggccgatgccgcctcaattatgatcgcattgtagtttcacagctcagatgatggtcat |
4842214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 4797849 - 4797761
Alignment:
| Q |
90 |
tatccagcaccaatgcagcaaatcttaccattttttcctttcctaacatatccacactggtgttaagatgtatcagtaaatacaattat |
178 |
Q |
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| T |
4797849 |
tatccagcaccaatgcagcaaatcttcacaatttttcctttcctaacctatccacagtggtgttcaaatgtatcaataaatacaattat |
4797761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 4815114 - 4815199
Alignment:
| Q |
86 |
tacatatccagcaccaatgcagcaaatctt-accattttttcctttcctaacatatccacactggtgttaagatgtatcagtaaata |
171 |
Q |
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| T |
4815114 |
tacatatacaacaccgatgcagcaaatcttcacca-tttttccttgcctaacctatccacagtggtgttgaagtgtatcagtaaata |
4815199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 4819654 - 4819715
Alignment:
| Q |
18 |
atatcgacgacaactacttgaatggatggacatcttgatgcaatgactgtcattgttggacc |
79 |
Q |
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| T |
4819654 |
atatcaacgacagctacttcaatggatggacatattaatgcaatgactgccattgctggacc |
4819715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 10775835 - 10775889
Alignment:
| Q |
121 |
tttttcctttcctaacatatccacactggtgttaagatgtatcagtaaatacaat |
175 |
Q |
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| T |
10775835 |
tttttcctttcctaacctatccatagtggtgttcaaatgtattagtaaatacaat |
10775889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 10775933 - 10775997
Alignment:
| Q |
249 |
tattgtggataattgtgatcaaatgcggcctatgccgccttaatagtgatcgcattgtagtttca |
313 |
Q |
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| T |
10775933 |
tattgtagagaactgtgatcaaatgcggccgatgccacatcaatcatgatcgcattgtagtttca |
10775997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 3665212 - 3665277
Alignment:
| Q |
56 |
tgcaatgactgtcattgttggaccctcccctacatatccagcaccaatgcagcaaatctt-accatttt |
123 |
Q |
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| T |
3665212 |
tgcaatgactgccattgttggacca---ccgacatatccggcaccaatgcagcaaatcttcaccatttt |
3665277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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