View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_13 (Length: 516)
Name: NF2018_high_13
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 19542646 - 19542153
Alignment:
| Q |
20 |
gtgctggaatccaagcagtcatgattttaattggagggttctttaaattgccacatgatcttcctaagccaatttggcgatatccattacattatgttgc |
119 |
Q |
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| T |
19542646 |
gtgctggaatccaagcaatcatgattttaattggagggttctttaaattgccacatgatcttcctaagccaatttggcgatatccattacattatgttgc |
19542547 |
T |
|
| Q |
120 |
ttttcatacaaattcctttgaaggactgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagcaattacattactggt |
219 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19542546 |
ttttcatacatattcctttgaaggattgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagtaattacattactggt |
19542447 |
T |
|
| Q |
220 |
gaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggttgatcttggaattttgcttgggatgattgttttgtatcgagttttgt |
319 |
Q |
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| T |
19542446 |
gaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggttgatcttggaattttgcttgggatgattgttttgtatcgagttttgt |
19542347 |
T |
|
| Q |
320 |
tccttgttataaccaagattacagagaaagcgaagcctgttcttggatcattgttaacttgcaagtcaatatcatccgatacaatcgtggagaagcctga |
419 |
Q |
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| T |
19542346 |
tccttgttataaccaagattacagagaaagtgaagcctgttcttggatcattgttaacttgcaagtcaatatcatccgatacaatcgtggagaagcctga |
19542247 |
T |
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| Q |
420 |
gctacttctttaaatggacatgctgtataaccatatatgtattagatgataagattgga-ttatgctattgatctcttcatatttcctttgctt |
512 |
Q |
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| T |
19542246 |
gctacttctttaaatggacatgctgtataaccttatatgtattagatgataagattggacttatgctattgatctcttcatatttccttcgctt |
19542153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 380
Target Start/End: Original strand, 37332960 - 37333320
Alignment:
| Q |
20 |
gtgctggaatccaagcagtcatgattttaattggagggttctttaaattgccacatgatcttcctaagccaatttggcgatatccattacattatgttgc |
119 |
Q |
| |
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|||||||||| |||| | ||||||| || |||||||||||||||||||||||||||| | ||||||||| ||||| | |||||| |||| |||||||| |
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| T |
37332960 |
gtgctggaattcaaggaatcatgatgttggttggagggttctttaaattgccacatgaaatccctaagccattttggaggtatccactacactatgttgc |
37333059 |
T |
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| Q |
120 |
ttttcatacaaattcctttgaaggactgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagcaattacattactggt |
219 |
Q |
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|||||| || || ||||||||| |||| ||||||||||||||||||||||||||| || | ||||| ||||||||||| | | |||||| |||||| |
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| T |
37333060 |
atttcattcatatgtatttgaaggattgttcaagaatgagtatgaaggactaagatttgatattaaaaatggacaaggcacaaatagttacatcactggt |
37333159 |
T |
|
| Q |
220 |
gaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggttgatcttggaattttgcttgggatgattgttttgtatcgagttttgt |
319 |
Q |
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|||||| ||||||| |||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
37333160 |
gaagaggttttgagggatacttggcaaagtaacatgagttactcaaaatgggttgatcttgcaattttgctagggatgattgttttgtatcgagttttgt |
37333259 |
T |
|
| Q |
320 |
tccttgttataaccaagattacagagaaagcgaagcctgttcttggatcattgttaacttg |
380 |
Q |
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||||| |||| | |||| |||| ||||| | ||||||| || |||||||||||||| |||| |
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| T |
37333260 |
tccttattatcatcaaggttacggagaaggtgaagcctattgttggatcattgttatcttg |
37333320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 20 - 387
Target Start/End: Original strand, 37323751 - 37324118
Alignment:
| Q |
20 |
gtgctggaatccaagcagtcatgattttaattggagggttctttaaattgccacatgatcttcctaagccaatttggcgatatccattacattatgttgc |
119 |
Q |
| |
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|||||||||| |||| | |||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||| |||||||| |
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| T |
37323751 |
gtgctggaattcaaggaatcatgattttggttggagggttctttaaattgccacatgaaattcctaagccattttggagatatccactacactatgttgc |
37323850 |
T |
|
| Q |
120 |
ttttcatacaaattcctttgaaggactgtttaagaatgagtatgaaggactaagatttaatgtaaaaaagggacaaggcactagcaattacattactggt |
219 |
Q |
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||||||||| || ||||||||| |||| ||||||||||||||||| ||| |||| | ||||| ||||||||||| | |||||||| |||| |
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| T |
37323851 |
atttcatacatatggatttgaaggattgttcaagaatgagtatgaagggttaatattttctactaaaaacggacaaggcacaaatggttacattagtggt |
37323950 |
T |
|
| Q |
220 |
gaagagattttgagagatatttggcaaagtgacatgagttactctaaatgggttgatcttggaattttgcttgggatgattgttttgtatcgagttttgt |
319 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
37323951 |
gaagaggttttgagagatatttggcaaagtaacatgagttactcaaaatgggttgatcttgcaattttgctagggatgattgttttgtatcgagttttgt |
37324050 |
T |
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| Q |
320 |
tccttgttataaccaagattacagagaaagcgaagcctgttcttggatcattgttaacttgcaagtca |
387 |
Q |
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| |||||||| | ||| ||||||||||| | ||||||| || ||||| |||| ||| |||||| |||| |
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| T |
37324051 |
ttcttgttattatcaaaattacagagaaggtgaagcctattattggaccattattatcttgcatgtca |
37324118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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