View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_high_14 (Length: 487)

Name: NF2018_high_14
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_high_14
NF2018_high_14
[»] chr5 (2 HSPs)
chr5 (177-473)||(15801933-15802229)
chr5 (9-148)||(15802258-15802397)
[»] chr8 (8 HSPs)
chr8 (9-144)||(3392245-3392380)
chr8 (9-144)||(3363504-3363639)
chr8 (9-147)||(3314192-3314328)
chr8 (295-469)||(3392537-3392710)
chr8 (295-469)||(3363173-3363347)
chr8 (241-294)||(3363373-3363425)
chr8 (241-293)||(3392459-3392510)
chr8 (414-472)||(3313800-3313861)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 177 - 473
Target Start/End: Complemental strand, 15802229 - 15801933
Alignment:
Q  177 ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802229 ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac 15802130  T
Q  277 taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatag 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  15802129 taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtaaaaaaacatttctgaaacatag 15802030  T
Q  377 ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggccagtacatcaactacatct 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15802029 ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggccagtacatcaactacatct 15801933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 15802397 - 15802258
Alignment:
Q  9 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 108  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15802397 acattatcaagttgcaacaatcgcaatttcttcattttcttaagagcaattgtattgaagcaaactctactggtcctttgcgacttcaaaaccaatccct 15802298  T
Q  109 cgatggcttttgttccctgtaacacaaagaaagaccatag 148  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  15802297 cgatggcttttgttccctgtgacacaaagaaagaccatag 15802258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 3392245 - 3392380
Alignment:
Q  9 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 108  Q
    |||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||  |||||||||||| ||||| || ||||||||| |||||||||||    
T  3392245 acattatcaagttgcaacaatctcaatctcttcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct 3392344  T
Q  109 cgatggcttttgttccctgtaacacaaagaaagacc 144  Q
    |||||||||||||||||||| |||||||||||||||    
T  3392345 cgatggcttttgttccctgtgacacaaagaaagacc 3392380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 3363639 - 3363504
Alignment:
Q  9 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 108  Q
    |||| ||||||||||||||||| |||| |  ||||||||| ||||||||||||||  |||||||||||| ||||| || ||||||||| |||||||||||    
T  3363639 acattatcaagttgcaacaatctcaatctaatcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct 3363540  T
Q  109 cgatggcttttgttccctgtaacacaaagaaagacc 144  Q
    |||||||||||||||||||| |||||||||||||||    
T  3363539 cgatggcttttgttccctgtgacacaaagaaagacc 3363504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 3314328 - 3314192
Alignment:
Q  9 acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct 108  Q
    |||| ||||||||||||||||| |||| |||||||||||| |||| | |||| || ||| | ||||||||||| |||||||||||||| |||||||||||    
T  3314328 acatgatcaagttgcaacaatctcaatctcttcattttctcaaaaccgattgcatcgaaaccaactctactggacctttgcaacttcataaccaatccct 3314229  T
Q  109 cgatggcttttgttccctgtaacacaaagaaagaccata 147  Q
    |||||||||||||||||||| ||||  ||||||||||||    
T  3314228 cgatggcttttgttccctgtgacac--agaaagaccata 3314192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 295 - 469
Target Start/End: Original strand, 3392537 - 3392710
Alignment:
Q  295 tggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatagttttatttttatcttcaa 394  Q
    |||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||  || ||||||| ||    
T  3392537 tggacagacacatgtgagataatgaatcccacaattttcagccaatagattggaaaagt--aaatacatttctgaaacatagttt--ttgttatctttaa 3392632  T
Q  395 agatcgtgaaggatgacaaaaattcaaaatgcaatgtag---aattcttacggtttgttcggccagtacatcaactac 469  Q
    |||| ||||| ||||||||| ||||||||| ||||||||   |||||||||||| || ||  ||||||||| ||||||    
T  3392633 agatagtgaaagatgacaaacattcaaaatacaatgtagagaaattcttacggtatggtcttccagtacattaactac 3392710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 469
Target Start/End: Complemental strand, 3363347 - 3363173
Alignment:
Q  295 tggacaaacactt-gtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatagttttatttttatcttca 393  Q
    |||||| |||||| |||| || ||||||||||||||||||||||||||||| |||||| |       ||||||||||||||||||||  | ||||||| |    
T  3363347 tggacagacacttagtgaaataatgaatcccacaattttcagccaatagattggaaaattaaaaa--catttctgaaacatagtttt--tgttatcttta 3363252  T
Q  394 aagatcgtgaaggatgacaaaaattcaaaatgcaatgta---gaattcttacggtttgttcggccagtacatcaactac 469  Q
    ||||| |||||  ||||||||| ||||||||||||||||    |||||||||||| |  || |||||||||| ||||||    
T  3363251 aagatagtgaaaaatgacaaaagttcaaaatgcaatgtactgaaattcttacggtatagtctgccagtacattaactac 3363173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 3363425 - 3363373
Alignment:
Q  241 cccaatcatatataaaatgacatttttctcatgaactaacttctccaaaaactt 294  Q
    |||||| ||||||||||||||||  ||||||||||||||| |||||||||||||    
T  3363425 cccaattatatataaaatgacatcattctcatgaactaac-tctccaaaaactt 3363373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 3392459 - 3392510
Alignment:
Q  241 cccaatcatatataaaatgacatttttctcatgaactaacttctccaaaaact 293  Q
    |||||| ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  3392459 cccaattatatataaaatgacatcattctcatgaactaac-tctccaaaaact 3392510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 472
Target Start/End: Complemental strand, 3313861 - 3313800
Alignment:
Q  414 aaattcaaaatgcaatgtaga---attcttacggtttgttcggccagtacatcaactacatc 472  Q
    |||||||||||||||||||||   |||||||| || || |||| ||||||||||||||||||    
T  3313861 aaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatc 3313800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University