View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_high_15 (Length: 485)

Name: NF2018_high_15
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_high_15
NF2018_high_15
[»] chr6 (2 HSPs)
chr6 (8-467)||(24197219-24197683)
chr6 (180-225)||(18859877-18859922)
[»] chr3 (3 HSPs)
chr3 (31-311)||(47697454-47697737)
chr3 (308-467)||(47696840-47697000)
chr3 (114-148)||(15324578-15324612)
[»] chr5 (3 HSPs)
chr5 (8-249)||(43449223-43449467)
chr5 (180-216)||(10028400-10028436)
chr5 (180-216)||(30343133-30343169)
[»] scaffold0225 (1 HSPs)
scaffold0225 (180-225)||(11104-11149)
[»] scaffold0029 (1 HSPs)
scaffold0029 (181-225)||(139085-139129)
[»] scaffold0002 (1 HSPs)
scaffold0002 (181-225)||(316551-316595)
[»] scaffold0262 (1 HSPs)
scaffold0262 (180-219)||(22387-22426)
[»] chr8 (1 HSPs)
chr8 (114-148)||(14774381-14774415)
[»] chr1 (1 HSPs)
chr1 (180-225)||(14856846-14856891)
[»] scaffold0118 (2 HSPs)
scaffold0118 (180-216)||(22296-22332)
scaffold0118 (180-216)||(25248-25284)
[»] chr7 (3 HSPs)
chr7 (164-208)||(17501878-17501922)
chr7 (164-208)||(17551292-17551336)
chr7 (180-216)||(42235409-42235445)
[»] chr4 (1 HSPs)
chr4 (180-216)||(55555861-55555897)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 24197683 - 24197219
Alignment:
Q  8 cgaataatatatggtctacctcaaattttaatttgaagttgtggaaatttccattttagtgtttttattatagnnnnnnnnnattaagaatatcattnnn 107  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||       
T  24197683 cgaaaaatatatggtctacctcaaattttaaattgaagttgtggaaatttccattttagtgtttttattatagtttttttttattaagaatatcattaaa 24197584  T
Q  108 nnnn--tgaattgatttctataatcatagtgcgcattaaatcataatnnnnnnnngtattatcaaaataaaagggaatgacaattgaacatttaaatgtt 205  Q
          |||||||||||||||||||||||||| ||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||    
T  24197583 aaaaaatgaattgatttctataatcatagtgcacattaaatcataataaaaaaa-gtattatcaaaagaaaagggaatgacaattgaacatttaaatgtt 24197485  T
Q  206 tgaattttaataagtaaaatggtac----ttagagagtacaatgggtgttctagcctatattatatactcctctcacaacttggttatgacacgtggtgt 301  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  24197484 tgaattttaataagtaaaatggtacataattagagagtacaatgggtgttctagcctatattatatactcctcttagaacttggttatgacacgtggtgt 24197385  T
Q  302 catagactaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccannnnnnnnactacataattaacatagt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  24197384 catagactaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccattttttttactacataattaacatagt 24197285  T
Q  402 attcgttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactat 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24197284 attcgttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactat 24197219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 18859922 - 18859877
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaataagtaaaat 225  Q
    |||||||||||| | |||||||||||||| |||||||||| |||||    
T  18859922 gaatgacaattggatatttaaatgtttgagttttaataaggaaaat 18859877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 31 - 311
Target Start/End: Complemental strand, 47697737 - 47697454
Alignment:
Q  31 aattttaatttgaagttgtggaaatttccattttagtgtttttattatagnnnnnnnnnattaagaatatcattnnnnnnntgaattgatttctataatc 130  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||       |||||||||||||||||||    
T  47697737 aatttttaattgaagttgtggaaatttccattttagtgtttttattatagattttttttattaagaatatcattaaaaaaatgaattgatttctataatc 47697638  T
Q  131 atagtgcgcattaaatcataatnnnnnnnngtattatcaaaataaaagggaatgacaattgaacatttaaatgtttgaattttaataagtaaaatggtac 230  Q
    ||||||||||||||||||||||        |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697637 atagtgcgcattaaatcataataaaaaat-gtattatcaaaagaacaaggaatgacaattgaacatttaaatgtttgaattttaataagtaaaatggtac 47697539  T
Q  231 ----ttagagagtacaatgggtgttctagcctatattatatactcctctcacaacttggttatgacacgtggtgtcatagactaa 311  Q
        |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  47697538 ataattagagagtacaatgggtattctagcctatattatacactcctctcagaacttggttatgacacgtggtgtcatagactaa 47697454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 308 - 467
Target Start/End: Complemental strand, 47697000 - 47696840
Alignment:
Q  308 ctaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccannnnnnnn-actacataattaacatagtattcg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||    
T  47697000 ctaaaacaaacattcttgtgcatttggcatttaatgctgttattttaattttattatttaatctccatttttttttaatacataattaacatagtattcg 47696901  T
Q  407 ttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactat 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47696900 ttctaaaataatttatcgggtcaatacttctagcctcatacaaatggaaacatataactat 47696840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 15324578 - 15324612
Alignment:
Q  114 aattgatttctataatcatagtgcgcattaaatca 148  Q
    ||||||||||||||||||| |||||||||||||||    
T  15324578 aattgatttctataatcatggtgcgcattaaatca 15324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 43449467 - 43449223
Alignment:
Q  8 cgaataatatatggtctacctcaaattttaatttgaagttgtggaaatttccattttagtgtttttattatagnnnnnnnnnattaagaatatcattnnn 107  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||||       
T  43449467 cgaaaaatatatggtctacctcaaattttaaattgaagttgtggaaatttccattttagtgtttttattatagttttttt--attaagaatatcattaaa 43449370  T
Q  108 nnnn-tgaattgatttctataatcatagtgcgcattaaatcataatnnnnnnnngtattatcaaaataaaagggaatgacaattgaacatttaaatgttt 206  Q
         |||||||||| ||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||    
T  43449369 aaaaatgaattgattgctataatcatagtgcgcattaaatcataataaaaaaaagtattatcaaaagaaaagggaatgacaattgaacatttaaatgttt 43449270  T
Q  207 gaattttaataagtaaaatggtac----ttagagagtacaatgggtg 249  Q
    ||||||||||||||||||||||||    |||||||||||||||||||    
T  43449269 gaattttaataagtaaaatggtacataattagagagtacaatgggtg 43449223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 10028436 - 10028400
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaat 216  Q
    |||||||||||||| |||||||||||||| |||||||    
T  10028436 gaatgacaattgaatatttaaatgtttgagttttaat 10028400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 30343133 - 30343169
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaat 216  Q
    |||||||||||||| |||||||||||||| |||||||    
T  30343133 gaatgacaattgaatatttaaatgtttgagttttaat 30343169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 11104 - 11149
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaataagtaaaat 225  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||    
T  11104 gaatgacaattgaaaatttaaatgtttgagttttaataaggaaaat 11149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 139085 - 139129
Alignment:
Q  181 aatgacaattgaacatttaaatgtttgaattttaataagtaaaat 225  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  139085 aatgacaattgaatatttaaatgtttgagttttaataaggaaaat 139129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 316551 - 316595
Alignment:
Q  181 aatgacaattgaacatttaaatgtttgaattttaataagtaaaat 225  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||    
T  316551 aatgacaattgaatatttaaatgtttgagttttaataaggaaaat 316595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 22426 - 22387
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaataag 219  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  22426 gaatgacaattgaatatttaaatgtttgatttttaataag 22387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 14774415 - 14774381
Alignment:
Q  114 aattgatttctataatcatagtgcgcattaaatca 148  Q
    ||||||||||||||||||| |||||||||||||||    
T  14774415 aattgatttctataatcatggtgcgcattaaatca 14774381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 14856891 - 14856846
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaataagtaaaat 225  Q
    |||||||||||| | |||||||||||||| |||||||||| |||||    
T  14856891 gaatgacaattggatatttaaatgtttgagttttaataaggaaaat 14856846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 22296 - 22332
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaat 216  Q
    |||||||||||||| |||||||||||||| |||||||    
T  22296 gaatgacaattgaatatttaaatgtttgagttttaat 22332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 25248 - 25284
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaat 216  Q
    |||||||||||||| |||||||||||||| |||||||    
T  25248 gaatgacaattgaatatttaaatgtttgagttttaat 25284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 17501878 - 17501922
Alignment:
Q  164 ttatcaaaataaaagggaatgacaattgaacatttaaatgtttga 208  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||    
T  17501878 ttatcaaaataaaaaggaatgacaattagatatttaaatgtttga 17501922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 17551336 - 17551292
Alignment:
Q  164 ttatcaaaataaaagggaatgacaattgaacatttaaatgtttga 208  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||    
T  17551336 ttatcaaaataaaaaggaatgacaattagatatttaaatgtttga 17551292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 42235445 - 42235409
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaat 216  Q
    |||||||||||||| |||||||||||||| |||||||    
T  42235445 gaatgacaattgaatatttaaatgtttgagttttaat 42235409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 55555861 - 55555897
Alignment:
Q  180 gaatgacaattgaacatttaaatgtttgaattttaat 216  Q
    |||||||||||||| |||||||||||||| |||||||    
T  55555861 gaatgacaattgaatatttaaatgtttgagttttaat 55555897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University