View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_high_16 (Length: 482)
Name: NF2018_high_16
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 51876435 - 51876211
Alignment:
| Q |
16 |
atgtacggattatcttcaagaaaaatatagtatgtagtgtgaggcttagatgcacaagaaaaatcatggcccgtacaatccatgagagttcaacattgga |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51876435 |
atgtactgattatcttcaagaaaaatatagtatgtagtgtgaggcttagatgcacaagaaaaatcatggcccgtacaatccatgagagttcaacattgga |
51876336 |
T |
|
| Q |
116 |
agaattaaagtgtttttcagtagaattatgggccggacagaatgataaaaacgacaacaccatacttcatagcttaatttttgtactacaaacttcttgc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51876335 |
agaattaaagtgtttttcagtagaattatggcccggacagaatgataaaaacgacaacaccatacttcatagcttaatttttgtactacaaacttcttgc |
51876236 |
T |
|
| Q |
216 |
tcattcaacttttttcttattctct |
240 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51876235 |
tcattcaacttttttcttattctct |
51876211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 51876171 - 51876052
Alignment:
| Q |
248 |
gagggagtagttgattctgtattttggaattgatttatcaaagtctaaacacatagtacacttaattttaagaaaattcttaggtggcttgagttttgat |
347 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51876171 |
gagggagtagttgattctgtatttttgaattgatttatcaaagtctaaacacatattacacttaattttaagaaaattcttaggtggcttgagttttgat |
51876072 |
T |
|
| Q |
348 |
ggatagcggttctcatgtag |
367 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51876071 |
ggatagcggttctcatgtag |
51876052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 465
Target Start/End: Complemental strand, 51875991 - 51875954
Alignment:
| Q |
428 |
gatattaaataattgaatgttgtattccatacaaaatg |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51875991 |
gatattaaataattgaatgttgtattccatacaaaatg |
51875954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University