View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_18 (Length: 473)
Name: NF2018_high_18
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 35392084 - 35391634
Alignment:
| Q |
16 |
atgccaaagcactcaaaacactctctaagatgtttatt----aatttacaaaggattgtaaaccatagtatttaacttttt-aaccaagaat---ctgaa |
107 |
Q |
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| T |
35392084 |
atgccaaagcacccaaaacactctctaagatgtttatttaataatttacaaaggatcgtaaaccatagtatttaactttttgaaccaagaatgttctgaa |
35391985 |
T |
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| Q |
108 |
aacattagtagaaaactcaaacattttagcaaatgtgaaattataatagaggtgagaaaatttaaacggttgattaaaaagcatcaagacatcaagaagc |
207 |
Q |
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| T |
35391984 |
aacattagtagaaaactcaaacattttagcaaatgtgaaattataatagaggtgagaaaatctaaacggttgattaaaaagcatcaagacatcaagaagc |
35391885 |
T |
|
| Q |
208 |
caccatgtgtcaacctccaaaacccaaattattaagaaagggtttaagagtttaagcactttcatctcagaagcagccataagtgcttttcaaggtaaga |
307 |
Q |
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| T |
35391884 |
caccatgtgtcaacctccaaaacccaaattattaagaaagggtttaagagtttaagcactttcatctcagaagcagccataagtgcttttcaaggtaaga |
35391785 |
T |
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| Q |
308 |
tcccaactttttcactgcccgttttcccaattccattctgatttcactgttttcccattcagcatctcgagcttttgtttatttcttcgtttttacctgt |
407 |
Q |
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| T |
35391784 |
tcccaactttttcactgcccgttttcccaattccattctgatttcactgttttcccattcagcatctcgggcttttgtttatttcttcgtttttacctgt |
35391685 |
T |
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| Q |
408 |
ttattgagtttcaagtagttgtatattttcagtattttgacattgatggtg |
458 |
Q |
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| T |
35391684 |
ttattgagtttcaagtagttgtatattttcagtattttgacattgatggtg |
35391634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 274 - 453
Target Start/End: Complemental strand, 3991854 - 3991674
Alignment:
| Q |
274 |
tcagaagcagccataagtgctttt-caaggtaagatcccaactttttcactgcccgttttcccaattccattctgatttcactgttttcccattcagcat |
372 |
Q |
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||||||||||||| ||| | |||| |||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
3991854 |
tcagaagcagccacaagcgatttttcaaggtaagatcacaactttttcactacccattttcccatttccattctgatttcactgttttcccattcagctt |
3991755 |
T |
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| Q |
373 |
ctcgagcttttgtttatttcttcgtttttacctgtttattgagtttcaagtagttgtatattttcagtattttgacattga |
453 |
Q |
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| T |
3991754 |
ctttggcttttgtttatttcttcgtttttacctgtttattgggtttcgagtagttgtgtattttcagtattttgacattga |
3991674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 3995527 - 3995414
Alignment:
| Q |
160 |
tgagaaaatttaaacggttgattaaaaagcatcaagacatcaagaagccaccatgtgtcaacctccaaaacccaaattattaaga-aagggtttaagagt |
258 |
Q |
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||||||||| | ||||||||||| |||| ||| |||||||||| ||||||||| |||||||| |||||||||| ||| | || | |||||||||||||| |
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| T |
3995527 |
tgagaaaatctgaacggttgattcaaaaacattaagacatcaaaaagccaccacgtgtcaacttccaaaaccctaatattaaacacaagggtttaagagt |
3995428 |
T |
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| Q |
259 |
ttaagcactttcat |
272 |
Q |
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|||||||||||||| |
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| T |
3995427 |
ttaagcactttcat |
3995414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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