View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_high_20 (Length: 458)
Name: NF2018_high_20
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 120 - 398
Target Start/End: Original strand, 24202391 - 24202667
Alignment:
| Q |
120 |
gagtatcacatttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggataaaaaagatatcaaagtt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
24202391 |
gagtatcacatttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggacaaaa--gatatcaaagtt |
24202488 |
T |
|
| Q |
220 |
gagtttcgtgtgatgaattcaactttaactaaagaaatgggcatgatgaaagcacagttgaagcgatgaaaagatgcaactcttgaagctgtatcattgt |
319 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||| |||||| | |||||||||||||||||| |||||||| | |||||||| ||||| ||| |
|
|
| T |
24202489 |
gagtttcgtgttatggcttcaactttatctaaagaaatgggaatgatggatgcacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgc |
24202588 |
T |
|
| Q |
320 |
gtgagaaagcacattcactaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctcac |
398 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24202589 |
gtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcac |
24202667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 24202237 - 24202350
Alignment:
| Q |
10 |
aagaatatctttagcacgttgttcatcttttgttattttcatgactggtt-ggtattagaatattatggaaatatctcatgaatttaatatttttgtatc |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24202237 |
aagaatatctttagcatgttgttcatcttttgttattttcatgaatggtttggtgttagaatattatggaaatatctcatgaatttaatattttcgtatc |
24202336 |
T |
|
| Q |
109 |
ttaaaacaaaggag |
122 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24202337 |
ttaaaacaaaggag |
24202350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 136 - 398
Target Start/End: Complemental strand, 36668657 - 36668397
Alignment:
| Q |
136 |
tatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtgtgatga |
235 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||| |
|
|
| T |
36668657 |
tatttagatttgcagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcagggagaaaa--gatatcaaagctgagtttggtgtgatgt |
36668560 |
T |
|
| Q |
236 |
attcaactttaactaaagaaatgggcatgatgaaagcacagttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattc |
335 |
Q |
| |
|
|||| | ||| ||||||||||||| |||||| || |||||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
36668559 |
cttcagccttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcatgaagctgtatcattgcgtgcgaaagcacattc |
36668460 |
T |
|
| Q |
336 |
actaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctcac |
398 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
36668459 |
gctaagagagaaattgagtgggaaggttattcacacaaactgccatttcattttctttctcac |
36668397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 130 - 398
Target Start/End: Complemental strand, 27561790 - 27561526
Alignment:
| Q |
130 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtg |
229 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||| |
|
|
| T |
27561790 |
tttctctatttagatttgcagtgtgtacgtttggatctcctcatttcttacaatattaaacgttttagggagaaat--gatatcaaagctgagtttcgtg |
27561693 |
T |
|
| Q |
230 |
tgatgaattcaactttaactaaagaaatgggcatgatgaaagcacagttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagc |
329 |
Q |
| |
|
|||| |||| ||||| ||||||||||||| |||||| || ||||||||||||||| ||||||||| ||||| |||||||| ||||| |||||||||| |
|
|
| T |
27561692 |
tgatatcttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatcgaaagatgcagctcttaaagctgtagcattgcgtgagaaagc |
27561593 |
T |
|
| Q |
330 |
acattcactaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctcac |
398 |
Q |
| |
|
||||||| | || | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27561592 |
acattcattcag--cgaaattgagtgggaaggttattcacacaaacttccctttcattttctttctcac |
27561526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 27564523 - 27564431
Alignment:
| Q |
28 |
ttgttcatcttttgttattttcatgactggttggtattagaatattatggaaatatctcatgaatttaatatttttgtatcttaaaacaaagg |
120 |
Q |
| |
|
|||||||| | |||||||||| |||| ||||| | |||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
27564523 |
ttgttcatttcttgttattttgatgattggttaatgttagaataatatggaaatatctcatgaaattaatattttcgtatcttaagacaaagg |
27564431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 31707911 - 31707830
Alignment:
| Q |
130 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggataaaaaagata |
211 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
31707911 |
tttctctatttagatttgtagtgtgtatgtttggatctcctcatttcttacaatattaaatgtttcaaggagaaaagagata |
31707830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 36672831 - 36672910
Alignment:
| Q |
274 |
cagttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagcacattcactaagacccaaattgag |
353 |
Q |
| |
|
||||||||| |||| ||||||| | ||||||||| |||||||||||||||||||||| || ||||||| | |||||||| |
|
|
| T |
36672831 |
cagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagcagttttactaagagcgaaattgag |
36672910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 36673118 - 36673062
Alignment:
| Q |
64 |
ttagaatattatggaaatatctcatgaatttaatatttttgtatcttaaaacaaagg |
120 |
Q |
| |
|
||||| || ||||||| |||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
36673118 |
ttagactaatatggaaggatctcatgaaattaatattttcgcatcttaaaacaaagg |
36673062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 130 - 396
Target Start/End: Complemental strand, 29411195 - 29410931
Alignment:
| Q |
130 |
tttctctatttagatttgcagtgagtatgtttagatctccttggttcttacaatattaaatgtttcagggataaaaaagatatcaaagttgagtttcgtg |
229 |
Q |
| |
|
|||||||||||| ||||||| || |||||||| |||| ||| | |||||||| | |||||| ||||||||| |||| || ||||||| |||||||||| |
|
|
| T |
29411195 |
tttctctatttatatttgcactgtgtatgtttggatcccctcgtttcttacactgttaaatttttcagggagaaaa--gacatcaaagccgagtttcgtg |
29411098 |
T |
|
| Q |
230 |
tgatgaattcaactttaactaaagaaatgggcatgatgaaagcacagttgaagcgatgaaaagatgcaactcttgaagctgtatcattgtgtgagaaagc |
329 |
Q |
| |
|
||||| |||| ||||| ||||||||||||| |||||| | || ||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
29411097 |
tgatggcttcagctttatctaaagaaatggggatgatggacgcgcaggtgaagcgatggaaagatgcagctcttgaagctgtatcattacgtgagaaagc |
29410998 |
T |
|
| Q |
330 |
acattcactaagacccaaattgagtggaaaggttattcacacaaagttccctttcattttctttctc |
396 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||| |
|
|
| T |
29410997 |
gcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctttctc |
29410931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 29413793 - 29413687
Alignment:
| Q |
11 |
agaatatctttagcacgttgttcatcttttgttattttcatgactggttggtattagaatattatggaaatatctcatgaatttaatatttttgtatctt |
110 |
Q |
| |
|
|||| |||||| ||||||||||||| | ||||||||| |||| ||||| | ||| |||| ||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
29413793 |
agaacatctttggcacgttgttcatttcttgttatttcgatgattggttaatgttacaataatatggaaatatctcatgaaattaatattttcgtatctt |
29413694 |
T |
|
| Q |
111 |
aaaacaa |
117 |
Q |
| |
|
|||||| |
|
|
| T |
29413693 |
gaaacaa |
29413687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 26930212 - 26930165
Alignment:
| Q |
73 |
tatggaaatatctcatgaatttaatatttttgtatcttaaaacaaagg |
120 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
26930212 |
tatggaaatatctcatgaaattaatattatcgtatcttaaaacaaagg |
26930165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 26963193 - 26963113
Alignment:
| Q |
40 |
tgttattttcatgactggttggtattagaatattatggaaatatctcatgaatttaatatttttgtatcttaaaacaaagg |
120 |
Q |
| |
|
||||||||| ||||||||| | ||| ||| |||||| ||||||||||||| ||||||| | ||||||||||| ||||| |
|
|
| T |
26963193 |
tgttattttgatgactggtgaatgttaaaatgatatggatatatctcatgaatataatattgtcgtatcttaaaagaaagg |
26963113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University