View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_21 (Length: 443)
Name: NF2018_high_21
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_21 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 89726 - 90014
Alignment:
| Q |
6 |
agaagcataggcaggagaagcattagagatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataa |
105 |
Q |
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|||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
89726 |
agaaacattggcaggagaaacattagagatgaaacattcaggtaagaatgaataaaatttagtatctttctactagaaattgatttatgatatatgataa |
89825 |
T |
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| Q |
106 |
taatctatttgtttctctttcagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgtgacaacgggggatcagcaag |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
89826 |
taatctatttgtttctctttcagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgcgacaacggaggatcagcaag |
89925 |
T |
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| Q |
206 |
nnnnnnnngaaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
294 |
Q |
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| T |
89926 |
aaaaaaaagaaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
90014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 97574 - 97742
Alignment:
| Q |
15 |
ggcaggagaagcattag-agatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctat |
113 |
Q |
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|||||||||| |||||| ||||||||||||| |||| | |||||||||||| || ||||||||||||||||||||| |||||||| || || |||| ||| |
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| T |
97574 |
ggcaggagaaacattagcagatgaaacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttattaatatat |
97673 |
T |
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| Q |
114 |
ttgtttctctttcagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcgg |
182 |
Q |
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| T |
97674 |
ttgatgctctttcagagacttcatctgaaaggctaggaggttgacaattttaatagagtccactagcgg |
97742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 90075 - 90148
Alignment:
| Q |
355 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaatt |
428 |
Q |
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| T |
90075 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaatt |
90148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 97787 - 97865
Alignment:
| Q |
215 |
aaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
294 |
Q |
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| T |
97787 |
aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacacattacccttcctgtagcaag |
97865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 294
Target Start/End: Complemental strand, 40876557 - 40876269
Alignment:
| Q |
6 |
agaagcataggcaggagaagcattagagatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataa |
105 |
Q |
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|||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40876557 |
agaaacattggcaggagaaacattagagatgaaacattcaggtaagaatgaataaaatttagtatctttctactagaaattgatttatgatatatgataa |
40876458 |
T |
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| Q |
106 |
taatctatttgtttctctttcagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgtgacaacgggggatcagcaag |
205 |
Q |
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| T |
40876457 |
taatctatttgtttctctttcagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcggcgcgacaacggaggatcagcaag |
40876358 |
T |
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| Q |
206 |
nnnnnnnngaaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
294 |
Q |
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| T |
40876357 |
aaaaaaaagaaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
40876269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 40868708 - 40868540
Alignment:
| Q |
15 |
ggcaggagaagcattag-agatgaaacattcaggtaagtatgaataaaatttagtatctttctactagaaattgatttatgatatatgataataatctat |
113 |
Q |
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|||||||||| |||||| ||||||||||||| |||| | |||||||||||| || ||||||||||||||||||||| |||||||| || || |||| ||| |
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| T |
40868708 |
ggcaggagaaacattagcagatgaaacattctggtatgaatgaataaaattgagaatctttctactagaaattgatatatgatatgtgttattaatatat |
40868609 |
T |
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| Q |
114 |
ttgtttctctttcagagacttcatcagaaaagctaggaggttgacaattttaatggattccactagcgg |
182 |
Q |
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||| | ||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
40868608 |
ttgatgctctttcagagacttcatctgaaaggctaggaggttgacaattttaatagagtccactagcgg |
40868540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 355 - 428
Target Start/End: Complemental strand, 40876208 - 40876135
Alignment:
| Q |
355 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaatt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40876208 |
ttgggaatagatgtgagggagagaaggaatactagagagtagagactagagatccaatatctctttaagaaatt |
40876135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 40868495 - 40868417
Alignment:
| Q |
215 |
aaaaccaccagttcaattgtagagctggatgatcaaattcctctattaccattttgacacattacccttcctatagcaag |
294 |
Q |
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||||||||||||| || | |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
40868495 |
aaaaccaccagttaaact-tagagctgaatgatcaaattactctattaccaatttgacacattacccttcctgtagcaag |
40868417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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