View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_25 (Length: 420)
Name: NF2018_high_25
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 33769166 - 33769548
Alignment:
| Q |
19 |
cccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaaggtctatgatagggacactgaactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769166 |
cccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaaggtctatgatagggacactgaactt |
33769265 |
T |
|
| Q |
119 |
ggaagatgcttcactttcatgatcagagttcaagttcaaattgggagaatgaaacatacgtgggatctttgtcgtacatattccagattctaagaggcct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33769266 |
ggaagatgcttcactttcatgatcagagttcaagttcaaattgggagaatgaaacatacgtgggatctttgtcgtccatattccagattctaagaggcct |
33769365 |
T |
|
| Q |
219 |
ttcacgccggtttttgattcttcaaaggctttcatttctgctgttctatcatatgtggaagaggaaccgttacttgcctctaactccatgatgagaaagt |
318 |
Q |
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| T |
33769366 |
ttcacgccggtttttgattcttcaaaggctttcacttctgctgttctatcatatgtggaagaggaaccgttacttgcctctaactccatgatgagaaagt |
33769465 |
T |
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| Q |
319 |
agaagaaaatacaaaatgtgtatgtgcactgaacctcaagtcaatgatgataatgctcaaatataaaaggaaagaagattgggc |
402 |
Q |
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| T |
33769466 |
agaagaaaatac-aaatgtgtatgtgcactgaacctcaagtcaatgatgataatgctcaaatatcaaatgaaagaagattgggc |
33769548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 33 - 332
Target Start/End: Original strand, 33772462 - 33772770
Alignment:
| Q |
33 |
gcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaaggtctatgatagggacactgaacttggaagatgcttcac |
132 |
Q |
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| T |
33772462 |
gcacttcgaatcttgtcaagtacctcagcatgcaaacatgggtttgtgtgtatattttgaaggtctatgatggggacattgaacttggaagatgggtcac |
33772561 |
T |
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| Q |
133 |
tttcatgatcagagttc------aagttcaaattgggagaatgaaacatacgtgggatctttgtcgtacatattccagattctaagaggcctttcacgcc |
226 |
Q |
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|||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||| || |
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| T |
33772562 |
tttcatgagtggagttcatgttcaagttcaaattgggataatggaacatacgtgggatctttgtcacacatattccagattccaagagacctttcacacc |
33772661 |
T |
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| Q |
227 |
ggtttttgattcttcaaaggctttcatttctgctgttctatcatatgtggaagaggaaccgttacttgcctctaact---ccatgatgagaaagtagaag |
323 |
Q |
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||||||||||||||||||||||| ||| ||| || ||||||||||||| ||| | ||| || ||||| ||| ||||||||| |||| || || |
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| T |
33772662 |
aacttttgattcttcaaaggctttcacttcagctaccctgtcatatgtggaagtggagcttttattttcctctgactcaaccatgatgataaagaagcag |
33772761 |
T |
|
| Q |
324 |
aaaatacaa |
332 |
Q |
| |
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||||||||| |
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|
| T |
33772762 |
aaaatacaa |
33772770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 328
Target Start/End: Original strand, 33764468 - 33764633
Alignment:
| Q |
166 |
aatgaaacatacgtgggatctttgtcgtacatattccagattctaagaggcctttcacgccggtttttgattcttcaaaggctttcatttctgctgttct |
265 |
Q |
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|||| ||||||||||||||||||||| ||| |||||||||||| ||||||||| || || | ||||||||| ||||| ||||||| ||| ||| |||| |
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| T |
33764468 |
aatggaacatacgtgggatctttgtcacgcatgttccagattctacgaggccttttacaccagcttttgattcgtcaaaagctttcacttcagctattct |
33764567 |
T |
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| Q |
266 |
atcatatgtggaa---gaggaaccgttacttgcctctaactccatgatgagaaagtagaagaaaat |
328 |
Q |
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| T |
33764568 |
gttatatgtggaagtggtggaactgttacttgcctctaactccatgactagaaagtagaagaaaat |
33764633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 33764306 - 33764413
Alignment:
| Q |
19 |
cccactccttgcatgcacttcgaatcttctcaagtacctcagcatgtaaacatggatcagtgtttatatcttgaaggtctatgatagggacactgaactt |
118 |
Q |
| |
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||||||||||||||||||| ||||| || |||| ||||||| |||| |||||||||| |||||| |||||||||||||| ||||| ||||||| ||||| |
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| T |
33764306 |
cccactccttgcatgcactacgaattttgtcaactacctcaacatgcaaacatggattagtgttcatatcttgaaggtcaatgatggggacacacaactt |
33764405 |
T |
|
| Q |
119 |
ggaagatg |
126 |
Q |
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||||||| |
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| T |
33764406 |
tgaagatg |
33764413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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