View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_27 (Length: 385)
Name: NF2018_high_27
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 48654725 - 48654396
Alignment:
| Q |
10 |
aaaaatatatagagaggaattgataatatatacttatgtgaaaggaataaatgtgaaatattggttgaggagtnnnnnnnn-gtaggacctaccgcgtcc |
108 |
Q |
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| T |
48654725 |
aaaaatatagagagaggaattgata---tatacttatgtgaaaggaataaatgtgaaatattggttgaggagtaaaaaaaaagtaggacctaccgcgtcc |
48654629 |
T |
|
| Q |
109 |
tcttactaaatgcaccaccctgcctgtgactttagaagcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654628 |
tcttactaaatgcaccaccctgcctgtgactttagaagcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagct |
48654529 |
T |
|
| Q |
209 |
aagaccttcattcaattcaaatt------caaaatccaagttattcacacacacgaaccatcatcatttataagcaagcacaacacaatgaattctccaa |
302 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654528 |
aagaccttcattgaattcaaattcaaattcaaaatccaagttattcacacacacgaaccatcatcatttataagcaagcacaacacaatgaattctccaa |
48654429 |
T |
|
| Q |
303 |
tattaattcaaattagctatacccacataaaac |
335 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48654428 |
tattaattcaaattagctatacccacataaaac |
48654396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 48646143 - 48646027
Alignment:
| Q |
145 |
agcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagtt |
244 |
Q |
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| T |
48646143 |
agcataagttcatttgctactccacgctctttttacgctctatttgatcaacacgtttagagctaagaccttcattcaa-----aatcaaaatacaattt |
48646049 |
T |
|
| Q |
245 |
attcacacacacgaaccatcat |
266 |
Q |
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||||||||||| || ||||||| |
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| T |
48646048 |
attcacacacaagagccatcat |
48646027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 190 - 334
Target Start/End: Complemental strand, 8146439 - 8146288
Alignment:
| Q |
190 |
gatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcacacacacgaaccatcatc-----------atttataagca |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| |
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| T |
8146439 |
gatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcac--acacgagccatcatcatttggtgtttatttataggca |
8146342 |
T |
|
| Q |
279 |
agcacaacacaatgaattctccaatattaattcaaattagctatacccacataaaa |
334 |
Q |
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|
| T |
8146341 |
agcacaacacaatgaattctccaatattaattgaaattagc--tacccacataaaa |
8146288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 334
Target Start/End: Complemental strand, 48570272 - 48570125
Alignment:
| Q |
194 |
aacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcacacacacgaaccatcatc-----------atttataagcaagca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| ||||||| |
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| T |
48570272 |
aacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcac--acacgagccatcatcatttggtgtttatttataggcaagca |
48570175 |
T |
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| Q |
283 |
caacacaatgaattctccaatattaattcaaattagctatacccacataaaa |
334 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
48570174 |
caacacaatgaattctccaatattaattgaaattagc--tacccacataaaa |
48570125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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