View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_high_3 (Length: 732)

Name: NF2018_high_3
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_high_3
NF2018_high_3
[»] chr3 (1 HSPs)
chr3 (1-723)||(41532992-41533714)


Alignment Details
Target: chr3 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Complemental strand, 41533714 - 41532992
Alignment:
Q  1 taaatttcgtttctggggttgtttaacttttgattttaacacgacccgttacttcaatttttgtttttgaagaaggaatgattattaagaggaacttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533714 taaatttcgtttctggggttgtttaacttttgattttaacacgacccgttacttcaatttttgtttttgaagaaggaatgattattaagaggaacttgaa 41533615  T
Q  101 atctcaaatgccgagtttgaaacggtgtaaactcgctgactcagttggtgatgatgaagagtgttcttatgctcgtaagaagnnnnnnnctaacggttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  41533614 atctcaaatgccgagtttgaaacggtgtaaactcgctgactcagttggtgatgatgaagagtgttcttatgctcgtaagaagaaaaaaactaacggttat 41533515  T
Q  201 tattatcctttgaatcttctaggtgatgttgctgctgggttaactccggtgagttttcatggtttgttgagtggtgtatcggagaagggattctctacgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533514 tattatcctttgaatcttctaggtgatgttgctgctgggttaactccggtgagttttcatggtttgttgagtggtgtatcggagaagggattctctacgt 41533415  T
Q  301 tgtggtgcagccaagttccgtgttcccctagtgaagttgaatcgaactcgaaggaggaaatggttgcggtgaagaagaaacgggttcaaagaccaccatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533414 tgtggtgcagccaagttccgtgttcccctagtgaagttgaatcgaactcgaaggaggaaatggttgcggtgaagaagaaacgggttcaaagaccaccatt 41533315  T
Q  401 agtgagaacttcgagagggcgagttcaggttcttccttcccggtttaatgactctgttcttgataattggaagaaggatggtaagactagcttgcgtgat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533314 agtgagaacttcgagagggcgagttcaggttcttccttcccggtttaatgactctgttcttgataattggaagaaggatggtaagactagcttgcgtgat 41533215  T
Q  501 tttgaagttgaagatgaatttgaatgcaagaaggacagggtagtacagaaaatttgcaatggcaatgttagaaaagggcgaaacaatgagaaaatcggtt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533214 tttgaagttgaagatgaatttgaatgcaagaaggacagggtagtacagaaaatttgcaatggcaatgttagaaaagggcgaaacaatgagaaaatcggtt 41533115  T
Q  601 ataagcaacgtaagtattcggcattgtgtagggatgatgatgttggtgtgagtatgaggtataagagttttggtagaaggaagaattcagttttggatgt 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533114 ataagcaacgtaagtattcggcattgtgtagggatgatgatgttggtgtgagtatgaggtataagagttttggtagaaggaagaattcagttttggatgt 41533015  T
Q  701 agatgaagttgatttgatgatgt 723  Q
    |||||||||||||||||||||||    
T  41533014 agatgaagttgatttgatgatgt 41532992  T

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