View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_high_33 (Length: 364)
Name: NF2018_high_33
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_33 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0364 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 14356147 - 14356504
Alignment:
| Q |
1 |
aagtgaaagttaagcccgcgattttaattcttaagaaattgaagcaagatcctgaacaagacaaaagagttaagaaacttgagcaagaactgtttgatca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14356147 |
aagtgaaagttaagcctgcgattttaattcttaagaaattgaagcaagatcctgaacaagacaaaagagttaagaaacttgagcaagaactgtttgatca |
14356246 |
T |
|
| Q |
101 |
gaagatgttgactgaagctttgaagagacaaatggctaaaatgaaagaagaatacaaagctcgtgaagaagctctagaagaaactgtgaagaaacagtca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14356247 |
gaagatgttgactgaagctttgaagagacaaatggctaaaacgaaagaagaatacaaagctcgtgaagaagctctagaagaaactgtgaagaaacagtca |
14356346 |
T |
|
| Q |
201 |
gaagacctcaaggcaataatgatggacatgatggccatgatggccatgatgaaacaacaacaacaacattagattgcacacattattttacttgttgttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14356347 |
gaagacctcaaggcaataatgatggacatgatgaccatg------atgaaacaacaacaacaacaacattagattgcacacattattttacttgttgttt |
14356440 |
T |
|
| Q |
301 |
atgatatttttgtctatgtttctcttgttatgcttctgatacttatgttttgatacctagaata |
364 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14356441 |
atgatattgttgtctatgtttctcttgttatgcttctgatacttatgttttgatacttagaata |
14356504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 19887173 - 19887287
Alignment:
| Q |
58 |
aagacaaaagagttaagaaacttgagcaagaactgtttgatcagaagatgttgactgaagctttgaagagacaaatggctaaaatgaaagaagaatacaa |
157 |
Q |
| |
|
|||||||||| ||| ||||| | ||||||||| ||||||| ||||||||| || ||||| |||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
19887173 |
aagacaaaagggttgagaaattagagcaagaattgtttgagcagaagatgctgtctgaaaacttgaagggacaaatggctgagatgaaagaagaatacaa |
19887272 |
T |
|
| Q |
158 |
agctcgtgaagaagc |
172 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
19887273 |
ggcacgtgaagaagc |
19887287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 10331952 - 10332085
Alignment:
| Q |
41 |
gaagcaagatcctgaacaagacaaaagagttaagaaacttgagcaagaactgtttgatcagaagatgttgactgaagctttgaagagacaaatggctaaa |
140 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| |||| ||| ||||||| |||||||| || |||||| | ||||||||||||||| |||||||||| |
|
|
| T |
10331952 |
gaagcaagatcatgagaaagacaaaagggttgagaagcttcagcaagagctgtttgaacaaaagatgatttctgaagctttgaagaaacaaatggctggt |
10332051 |
T |
|
| Q |
141 |
atgaaagaagaatacaaagctcgtgaagaagctc |
174 |
Q |
| |
|
||||||||||| | |||||||| |||||||||| |
|
|
| T |
10332052 |
atgaaagaagagcagaaagctcgcgaagaagctc |
10332085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 9350 - 9457
Alignment:
| Q |
65 |
aagagttaagaaacttgagcaagaactgtttgatcagaagatgttgactgaagctttgaagagacaaatggctaaaatgaaagaagaatacaaagctcgt |
164 |
Q |
| |
|
||||||| ||||| | ||||||||| ||||||| |||||||||||| ||||| || |||||||||||| | | || |||||||||||||| || ||| |
|
|
| T |
9350 |
aagagttgagaaattggagcaagaattgtttgagcagaagatgttgtctgaaaaatttaagagacaaatgtcagagataaaagaagaatacaaggcacgt |
9449 |
T |
|
| Q |
165 |
gaagaagc |
172 |
Q |
| |
|
|| ||||| |
|
|
| T |
9450 |
gaggaagc |
9457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University