View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_high_34 (Length: 363)
Name: NF2018_high_34
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_34 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 38028423 - 38028075
Alignment:
| Q |
1 |
tttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38028423 |
tttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcag |
38028324 |
T |
|
| Q |
101 |
ccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctaggaagatctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028323 |
ccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttcatctaggaagatctat |
38028224 |
T |
|
| Q |
201 |
taagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaacccaacctctgaaagcaagcttgtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028223 |
taagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaacccaacctctgaaagcaagcttgtga |
38028124 |
T |
|
| Q |
301 |
tgatcatttactattccaagaccatgtgaatagcacgggaagtccttat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38028123 |
tgatcatttactattccaagaccatgtgaatagcacgggaagtccttat |
38028075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 38033457 - 38033147
Alignment:
| Q |
1 |
tttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcag |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
38033457 |
tttcttgagttataatgatgacataagggtatctcctgtaagaaatgtcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcag |
38033358 |
T |
|
| Q |
101 |
ccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctaggaagatctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
38033357 |
ccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttcatctagggagagatat |
38033258 |
T |
|
| Q |
201 |
taagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaa-------cttacacaaacccaacctctgaaagcaag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||||| |||||||||| ||||| |
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|
| T |
38033257 |
taagctaaaatgaaaaaagaaagctcctccaactattccaagtccagtgagattcaatcatcaacttaagtcttacacaaacctaacctctgaatgcaag |
38033158 |
T |
|
| Q |
294 |
cttgtgatgat |
304 |
Q |
| |
|
||||||||||| |
|
|
| T |
38033157 |
cttgtgatgat |
38033147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 91 - 304
Target Start/End: Complemental strand, 38039652 - 38039441
Alignment:
| Q |
91 |
aaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctag |
190 |
Q |
| |
|
||||||||| ||||| | |||||||||||| ||||| || |||| ||||||| | |||||||| ||||||||||||||| |||||||||||| |
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|
| T |
38039652 |
aaacattcaaccaaactgtaatagttgataagttatattcgatctaagctca-atttcttttacatgtcctgtgcttctatcaactgattcttcatctag |
38039554 |
T |
|
| Q |
191 |
gaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaacccaacctctgaaagc |
290 |
Q |
| |
|
| | | | | ||||||||||| ||| |||||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
38039553 |
gcaaaacaactaagctaaaat-aaataagaaagctcttccaactattccaagttccgtgggattcaatcaccaacttacacaaacccaacctctgaaagc |
38039455 |
T |
|
| Q |
291 |
aagcttgtgatgat |
304 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38039454 |
aagcttgtgatgat |
38039441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 38036444 - 38036151
Alignment:
| Q |
10 |
ttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattat |
109 |
Q |
| |
|
|||| ||||||| |||||||||| | ||||||| | | ||||| | | |||||||||||||| ||||||| | ||||||| ||||||||||||| ||| |
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|
| T |
38036444 |
ttataatgatgagataagggtatgtgctgtaagcagtatcgagat-cgaatattcctgcaaatttctctgac---ataataacacattcagccaaactat |
38036349 |
T |
|
| Q |
110 |
aatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctaggaagatctattaagctaaa |
209 |
Q |
| |
|
| |||| ||| | |||||| |||| |||||||||| || |||| |||||||||| ||||||| |||||||||| ||| ||||||||| | |
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| T |
38036348 |
a-tagtgtataagctatcttggatcaaagctcacaaattttt-acttgtcttgtgcttctatccactgctttttcatctaggcagagaaattaagctata |
38036251 |
T |
|
| Q |
210 |
atgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaa------cttacacaaacccaacctctgaaagcaagcttgtgatga |
303 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||||| |||||||| ||||| || |||||||| ||| ||| |||||||||||||||||||||| |
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|
| T |
38036250 |
at-aaaaatgaaagctcctctaactattccaagtcccatgagattcaatcatcaatttagtcttacacagacctaacgtctgaaagcaagcttgtgatga |
38036152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 50910454 - 50910736
Alignment:
| Q |
15 |
atgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcagccaaattataatag |
114 |
Q |
| |
|
||||||||||||| | || | ||||||| ||| ||||||| | |||||||||||||| |||| |||||||||| |||||||||||||| || | ||| |
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|
| T |
50910454 |
atgatgacataagagaatgtgctgtaagcaatatcgagct-cgaatattcctgcaaatttct--ggcctaataa---aacattcagccaaactaaagtag |
50910547 |
T |
|
| Q |
115 |
ttgataggttatcttagatccaagctcacaannnnnnn-acatgtccattgcttctatcaactgcttcttcatctaggaagatctattaagctaaaatga |
213 |
Q |
| |
|
|||||| || ||||| |||| |||||||||| |||||| ||||||||| || |||||||||||||||| |||| |||| |||| || | |
|
|
| T |
50910548 |
ttgataagt-atcttggatctaagctcacaattttttttacatgtattgtgcttctattaattgcttcttcatctaggcagatgaattaggctatgat-a |
50910645 |
T |
|
| Q |
214 |
aaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaacccaacctctgaaagcaagcttgtgatgat |
304 |
Q |
| |
|
|| |||||| |||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
50910646 |
aataagaaaactcctccaactattcctagtccagtgagattcaatcatcaacttgggcaaacccaaactctgaaagcaaacttctgatgat |
50910736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 21604411 - 21604113
Alignment:
| Q |
1 |
tttcttgagttattatgatgacataagggtatttcctgtaagaaatgtcgagcttccaatattcctgcaaacttctctggcctaataataaaacattcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21604411 |
tttcttgagttattatgatgacataagggtatttcctgtaagaaatatcgagcttccaatattcctgcaaatttctctggcctaataataaaacattcag |
21604312 |
T |
|
| Q |
101 |
ccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctaggaagatctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
21604311 |
ccaaattataatagttgataggttatcttagatctaagctcacaatttttttacatgtccattgcttctatcaactgcttcttcatctagggagagctat |
21604212 |
T |
|
| Q |
201 |
taagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaacccaacctctgaaagcaagcttgtg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21604211 |
taagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgcgagattccatcattaacttgcacaaacccaacctctgaaagcaagcttgtg |
21604113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 91 - 304
Target Start/End: Complemental strand, 21609370 - 21609159
Alignment:
| Q |
91 |
aaacattcagccaaattataatagttgataggttatcttagatccaagctcacaannnnnnnacatgtccattgcttctatcaactgcttcttcatctag |
190 |
Q |
| |
|
||||||||| ||||| | |||||||||||| ||||| || |||| ||||||| | |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
21609370 |
aaacattcaaccaaactgtaatagttgataagttatattcgatctaagctca-atttcttttacatgtcctgtgcttctatcaactgattcttcatctag |
21609272 |
T |
|
| Q |
191 |
gaagatctattaagctaaaatgaaaaaagaaagctcctccaactattccaagtcccgtgagattccatcattaacttacacaaacccaacctctgaaagc |
290 |
Q |
| |
|
| | | | | ||||||||||| ||| |||||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
21609271 |
gcaaaacaactaagctaaaat-aaataagaaagctcttccaactattccaagttccgtgggattcaatcaacaacttacacaaacccaacctatgaaagc |
21609173 |
T |
|
| Q |
291 |
aagcttgtgatgat |
304 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21609172 |
aagcttgtgatgat |
21609159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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