View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_4 (Length: 683)
Name: NF2018_high_4
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 548 - 667
Target Start/End: Original strand, 23330321 - 23330440
Alignment:
| Q |
548 |
ctatattcgttttcaataaaattagtaggttttgccttttacattagtacttaatctaagtataggacaattattacttttatttattttatacaatcag |
647 |
Q |
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| T |
23330321 |
ctatattcgttttcaataaaattagtaggttttgccttttacattagtacttaatctaagtataggacaattattacttttatttattttatacaatcag |
23330420 |
T |
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| Q |
648 |
ttattcaaaattcgatagtg |
667 |
Q |
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| T |
23330421 |
ttattcaaaattcgatagtg |
23330440 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 23329695 - 23329809
Alignment:
| Q |
10 |
attattctacattatattaatcattgagattttcgtgtaaccaaga-------agcaagagaatgggtcatgtttgcatatatttgtgattcataattca |
102 |
Q |
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| T |
23329695 |
attattctacattatattaatcattgagattttcgtgtaaccaagagagtgtaagcaagagaatgg-tcatttttgcatatatttgtgattcataattca |
23329793 |
T |
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| Q |
103 |
tatatattaaaatgtt |
118 |
Q |
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|||||||||||||||| |
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| T |
23329794 |
tatatattaaaatgtt |
23329809 |
T |
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