View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_42 (Length: 336)
Name: NF2018_high_42
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 17004757 - 17004451
Alignment:
| Q |
19 |
ttgatcgactcgagatgacttctgtggatctgtatcagcttcattggtctgtatttttagaagtctattgattgatgttgtttttatctaaaagtattgt |
118 |
Q |
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| T |
17004757 |
ttgatcgactcgagatgacttctgtggatctgtatcagcttcattggtctgtatttttataagtctattgattgatgctgtttttatctaaaaatattgt |
17004658 |
T |
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| Q |
119 |
ttttgatgaagtgacacgcttgtttttcaggcctggagtatggggaaatgaaggttgtccaaatgtaccaatttagttaattgaactatttacttaatat |
218 |
Q |
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| T |
17004657 |
ttttgatgaagtgacacgcttgtttttcaggcctggagtatggggaaatgaaggttgtccaaatgtaccaatttagttaattgaactatttacttaatat |
17004558 |
T |
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| Q |
219 |
agtaaatggaactaaatgtttcgaaacttattcataataatcatattaagagaatgctagttccccaatgaattgcttttcagggtatattgatggtcta |
318 |
Q |
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| T |
17004557 |
agtaaatggaactaaatgtttcgaaacttattcataataatcatattaagagaatgctagttccccaatgaattgcttttcagggtatattgatggtcta |
17004458 |
T |
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| Q |
319 |
ggtgatg |
325 |
Q |
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| T |
17004457 |
ggtgatg |
17004451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 325
Target Start/End: Complemental strand, 17035789 - 17035586
Alignment:
| Q |
118 |
tttttgatgaagtgacacgcttgtttttcaggcctggagtatggggaaatgaaggttgtccaaatgtaccaatttagttaattgaactatttacttaata |
217 |
Q |
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| T |
17035789 |
tttttaatgaagtaaaacacttgcttttcaggcctggagtatagggaaatgaaggttgt-taagtgtaccaatttaattcgtggaactatttattaaatt |
17035691 |
T |
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| Q |
218 |
tagtaaatggaactaaatgtttcgaaacttattcataataatcatattaagagaatgc-tagttccccaatgaattgcttttcagggtatattgatggtc |
316 |
Q |
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| T |
17035690 |
ttgttaatggaactagatgcttgaaaatgtattcataatcagc----taaaattatgcatatttcactaatgaattacttttcaggatacattgatggtc |
17035595 |
T |
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| Q |
317 |
taggtgatg |
325 |
Q |
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| T |
17035594 |
taggtgatg |
17035586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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