View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_43 (Length: 331)
Name: NF2018_high_43
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 1738521 - 1738417
Alignment:
| Q |
89 |
tttcatcatcaaacagaattgcaacacatttatatattattccatttatttgatttctcaccccataacattgttttgttttcatcaatcaacgatgtca |
188 |
Q |
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| T |
1738521 |
tttcatcatcaactagaattgcaactcatctctatattatttcatctatttgatttctcaccccataa-----tcttgttttcatcaatcaacgat-tca |
1738428 |
T |
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| Q |
189 |
tcatcttcatc |
199 |
Q |
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| T |
1738427 |
tcatcttcatc |
1738417 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 6330980 - 6331033
Alignment:
| Q |
19 |
tccatcaccttcttgttccttccataaccccaatcccccaatttcatccatatt |
72 |
Q |
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| T |
6330980 |
tccatcaccttcttgttccttcgataaccccaatcccccaatttcatccatatt |
6331033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 6331048 - 6331096
Alignment:
| Q |
110 |
caacacatttatatattattccatttatttgatttctcaccccataaca |
158 |
Q |
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| T |
6331048 |
caacacatttatatattattccatttatttgatttatcaccccataaca |
6331096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 6331095 - 6331188
Alignment:
| Q |
178 |
caacgatgtcatcatcttcatcaagattttatcagaagaaatcgcagcatatctgtttcgaaatgactagtttagagggactaaaaatcacaacaca |
274 |
Q |
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| T |
6331095 |
caacgatgtcatcgtgttcatcaa-attttatcaagagagattgcaacat--ctgtttcgaaaggactggtttagagggactaaaaatcacagcaca |
6331188 |
T |
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