View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_54 (Length: 289)
Name: NF2018_high_54
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 27412133 - 27411853
Alignment:
| Q |
1 |
tcaatatcggttcgcttcttcccgcctcactccgtaccatcacaagcctaacaagttgcacataaatctaagatgtgagatgtctaaagcatgtctacca |
100 |
Q |
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| T |
27412133 |
tcaatatcggttcgcttctttcctcctcacaccgttccatcacaagcctaacaagttgcacataaatctaagatgtgagatgtctaaagcatgtctacca |
27412034 |
T |
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| Q |
101 |
ttggagtagctatacccacccaaaatacaagaaaaaacatcaggttccattcgccattgcatcgtctcaaagtgtaagtgggttatatgttggacattat |
200 |
Q |
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| T |
27412033 |
ttggattagctatacccacccaaaatgcaagaaaaaacatcaggttccattcaccattgcattgtctcaaattttaagtgggttatatgttggacattat |
27411934 |
T |
|
| Q |
201 |
ttttcaaagtagggtatgtgcattttcttccatttatcttcctaatccttgaaaacaattccatgtgatcccatgtcactc |
281 |
Q |
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| T |
27411933 |
ttttcaaagtagggtatgtgcattttcttccatttatcttcctaatccttgaaaacaattccatgtgatcccatgtcactc |
27411853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 27419732 - 27419554
Alignment:
| Q |
73 |
atgtgagatgtctaaagcatgtctaccattggagtagctatacccacccaaaatacaagaaaaaacatcaggttccattcgccattgcatcgtctcaaag |
172 |
Q |
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| T |
27419732 |
atgtgagatgtctaaagcatgtctacaattggattatctataccc-----aaatgcaagaaaaaacatcaggtttctttcaccattgcattgtctcaaac |
27419638 |
T |
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| Q |
173 |
tgtaagt-gggttatatgttggacattatttttcaaagtagggtatgtgcattttcttccatttatcttcctaatccttgaaaa |
255 |
Q |
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| T |
27419637 |
ttcaagtagggttatttgttggccattatctcacaatgtggggtatgtgcatgctcttccattaagcttcctaatccttgaaaa |
27419554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27422680 - 27422605
Alignment:
| Q |
1 |
tcaatatcggttcgcttcttcccgcctcactccgtaccatcacaagcctaacaagttgcacataaatctaagatgt |
76 |
Q |
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||||||||||||| ||||| || |||||| | || ||| |||||||||||||||||||||| |||||| |||||| |
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| T |
27422680 |
tcaatatcggttctcttctctcctcctcacactgttccaacacaagcctaacaagttgcacacaaatctgagatgt |
27422605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 27425151 - 27425105
Alignment:
| Q |
70 |
aagatgtgagatgtctaaagcatgtctaccattggagtagctatacc |
116 |
Q |
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| T |
27425151 |
aagatgtgagatgtctaaaccatgtctaccattgcattagctatacc |
27425105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 27566754 - 27566791
Alignment:
| Q |
77 |
gagatgtctaaagcatgtctaccattggagtagctata |
114 |
Q |
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| T |
27566754 |
gagatgtctaaagcatgtctaccattggattagctata |
27566791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 27566861 - 27566913
Alignment:
| Q |
205 |
caaagtagggtatgtgcattttcttccatttatcttc--ctaatccttgaaaa |
255 |
Q |
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| T |
27566861 |
caaagtggggtatgtgcatgttcttccatttatcttcatctaatgcttgaaaa |
27566913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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