View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_56 (Length: 279)
Name: NF2018_high_56
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_56 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 21907455 - 21907572
Alignment:
| Q |
79 |
actaaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttactaatgttaggttcccaaataagaacaatgtgaaataaataatccttg |
178 |
Q |
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| T |
21907455 |
actaaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttgctaacgttaggttcgcaaataagaacaatgtgaaataaataatccctg |
21907554 |
T |
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| Q |
179 |
gtagatgataatctctag |
196 |
Q |
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||||||||| |||||||| |
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| T |
21907555 |
gtagatgatgatctctag |
21907572 |
T |
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Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 26556794 - 26556938
Alignment:
| Q |
51 |
gaaaattgatagtagtacttaaaatttgactaaatatggcttgtgcttaaaaaatgaacaaatataatttgctgagtttactaatgttaggttcccaaat |
150 |
Q |
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|||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||| ||||| |
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| T |
26556794 |
gaaaatcgatagtagtacttaaaacttgaataaatacggcttgtgcttaaaaaatga-caaatataattggttgagtttactgatgttaggttcgcaaat |
26556892 |
T |
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| Q |
151 |
aagaacaatgtgaaataaataatccttggtagatgataatctctag |
196 |
Q |
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||||||||||||||||| ||||||||||||||||||| | |||||| |
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| T |
26556893 |
aagaacaatgtgaaatagataatccttggtagatgatgacctctag |
26556938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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