View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_high_66 (Length: 250)
Name: NF2018_high_66
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_high_66 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 3938107 - 3938338
Alignment:
| Q |
16 |
atgagtaaaatttgacagagtcggataccattttgaaattttcataatcacgaaaacctatttgaaagtttcctataaatttatttggtggtttactcgt |
115 |
Q |
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| T |
3938107 |
atgagtaaaatttgatagagtcggagaccattttgaaattttcataatcacaaaaacctatttgaaagtttcctataaagttatttggtggtttactcgt |
3938206 |
T |
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| Q |
116 |
ttattttatttaaattcaaaatagaatcacttttaaaacaggattataataaattaagcaagtcctacattcaa----nnnnnnnnaattttcactcttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
3938207 |
ttattttatttaaattcaaaatagaatcacttttagaacaggattataataaattaagcaagtcctacactcaattttttttttttaattttcactcttt |
3938306 |
T |
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| Q |
212 |
ataaacaacatagtataacaaatatagagtat |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3938307 |
ataaacaacatagtataacaaatatagagtat |
3938338 |
T |
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