View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_high_8 (Length: 599)

Name: NF2018_high_8
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_high_8
NF2018_high_8
[»] chr1 (14 HSPs)
chr1 (19-594)||(47712866-47713441)
chr1 (18-573)||(47759802-47760357)
chr1 (19-573)||(47745479-47746024)
chr1 (18-579)||(47717684-47718236)
chr1 (34-245)||(6521594-6521811)
chr1 (19-206)||(6523581-6523768)
chr1 (37-124)||(6507051-6507138)
chr1 (34-119)||(6512957-6513042)
chr1 (19-111)||(6517364-6517456)
chr1 (521-573)||(47704889-47704941)
chr1 (159-243)||(47778037-47778127)
chr1 (19-83)||(6500263-6500327)
chr1 (420-461)||(47811738-47811779)
chr1 (421-461)||(6521987-6522027)
[»] chr5 (5 HSPs)
chr5 (18-198)||(28856511-28856691)
chr5 (18-201)||(28861785-28861968)
chr5 (18-245)||(28831268-28831495)
chr5 (172-245)||(28875835-28875908)
chr5 (528-573)||(28830931-28830976)
[»] scaffold0341 (2 HSPs)
scaffold0341 (37-124)||(1076-1163)
scaffold0341 (37-124)||(8730-8817)


Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 19 - 594
Target Start/End: Complemental strand, 47713441 - 47712866
Alignment:
Q  19 acttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaac 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713441 acttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaac 47713342  T
Q  119 ctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713341 ctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgtt 47713242  T
Q  219 gcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcga 318  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  47713241 gcgttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcga 47713142  T
Q  319 gttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaatt 418  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713141 gttcttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaatt 47713042  T
Q  419 ttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713041 ttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactg 47712942  T
Q  519 ttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgctcct 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47712941 ttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcct 47712866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Complemental strand, 47760357 - 47759802
Alignment:
Q  18 aacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaa 117  Q
    |||||||||| |  ||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  47760357 aacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagaggagatgttaaa 47760258  T
Q  118 cctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgt 217  Q
    || || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||    
T  47760257 cccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgataactgcatgt 47760158  T
Q  218 tgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcg 317  Q
    ||||||||||||||||||||||||| ||| || | ||| | |||||||||||||||||||  |||    | |||||||| |||||||||| |||||| |     
T  47760157 tgcgttactcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaacca 47760058  T
Q  318 agttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaat 417  Q
    ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||| |||||||||    
T  47760057 agttcttgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaat 47759958  T
Q  418 tttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttact 517  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||   |||||| ||||| ||||||| ||  |    
T  47759957 tttcaaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgtt 47759858  T
Q  518 gttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 573  Q
    || |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  47759857 gtaataacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa 47759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 47746024 - 47745479
Alignment:
Q  19 acttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaac 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  47746024 acttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaac 47745925  T
Q  119 ctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgtt 218  Q
    | ||  ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||| ||||||    
T  47745924 ccgacctttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaattagttggtatgataactgcatgtt 47745825  T
Q  219 gcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcga 318  Q
    ||||||||||||||||||||||||||||||| | ||    |||      | ||||| ||  |||   |  ||||||||||| |||| || |||||||| |    
T  47745824 gcgttactcaaaccgatcaatatttggcattatggatacttcattttcatattataagtggaacaatagaaatgtaaccgatgtggctcaatttaatcaa 47745725  T
Q  319 gttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaatt 418  Q
    |||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||| | | |||||||||         ||||||||    
T  47745724 gttcttgggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaatt 47745634  T
Q  419 ttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactg 518  Q
    || |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||  |||||| ||||||| ||||| ||  |     
T  47745633 ttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagtttttt 47745534  T
Q  519 ttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 573  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  47745533 ttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa 47745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 47718236 - 47717684
Alignment:
Q  18 aacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaa 117  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  47718236 aacttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaa 47718137  T
Q  118 cctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgt 217  Q
    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| |||||    
T  47718136 cctgacgtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggttggtatgttgactgcatgt 47718037  T
Q  218 tgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcg 317  Q
    ||||||||||||||||||||||||| ||| || | |||   |||||    | ||  | ||  | |  ||| |||| |||||||||||||| ||||||||     
T  47718036 tgcgttactcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtggaccttgaaaaatgcaaccgaggtggatcaatttaatca 47717937  T
Q  318 agttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaat 417  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| | | |||||||||         |||||||    
T  47717936 agttcttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgctaccgctaatgcaac---------tttgaat 47717846  T
Q  418 tttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttact 517  Q
    ||| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||| ||||||||||| ||||| |    
T  47717845 tttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatt 47717746  T
Q  518 gttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat 579  Q
     | |||||||| ||||  ||| |||| ||||||||||||| ||||||||| ||||| |||||    
T  47717745 ttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat 47717684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 6521594 - 6521811
Alignment:
Q  34 atcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgca 133  Q
    ||||||||||| ||||| |||| |||||||||  | ||||| |||||||||||||| |||||||| || ||||||||||| ||||   ||| ||| |  |    
T  6521594 atcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaa 6521693  T
Q  134 gtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggt------atgaggactacatgttgcgttactc 227  Q
     | | |||||  ||||||  |||||||| ||| ||| ||||| ||||| ||||||||||||||| ||||      |||| || | |||||||||||||||    
T  6521694 attgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactc 6521793  T
Q  228 aaaccgatcaatatttgg 245  Q
    |||||| |||||||||||    
T  6521794 aaaccgttcaatatttgg 6521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 6523581 - 6523768
Alignment:
Q  19 acttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaac 118  Q
    ||||||||||| |||||||||||||| ||||||||||||||  | ||  |||||||  ||||||||||||| ||||| || |||||||| ||||||||      
T  6523581 acttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaaga 6523680  T
Q  119 ctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatga 206  Q
    |  | |  || |  ||| | ||||||| ||||||      ||||||| | ||||||||||||||||||||||||||||||||||||||    
T  6523681 caaacgagtgtcttagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatga 6523768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 6507138 - 6507051
Alignment:
Q  37 aactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg 124  Q
    |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  6507138 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg 6507051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 6513042 - 6512957
Alignment:
Q  34 atcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc 119  Q
    ||||||||||| ||||| |||| |||||||||   ||||||||||||||||||||| |||||||| || ||||||||||| |||||    
T  6513042 atcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc 6512957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 6517456 - 6517364
Alignment:
Q  19 acttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagat 111  Q
    ||||||||||   ||||||||||||| ||||| || | ||||||||||  ||||| ||||||||||||||| |||||||| ||||||||||||    
T  6517456 acttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat 6517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 521 - 573
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
Q  521 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 573  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa 47704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 47778037 - 47778127
Alignment:
Q  159 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgagg------actacatgttgcgttactcaaaccgatcaatattt 243  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||| ||||      | | |||||||||||||||| |||| |||||||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatattt 47778127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 6500327 - 6500263
Alignment:
Q  19 acttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagt 83  Q
    |||||||||||  ||||||||||||| ||||||||||| ||  ||||| |||||| |||||||||    
T  6500327 acttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagt 6500263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
Q  420 tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc 461  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  47811738 tcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 461
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
Q  421 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 461  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  6521987 caaaccatatatggtcttgttcaatgcacacctgatttgtc 6522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 28856691 - 28856511
Alignment:
Q  18 aacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaa 117  Q
    ||||||||||||  |||||| |||||| |||||||| ||||| |  ||| || ||| | |||||||| ||||||| ||| | |||||||||||||||||     
T  28856691 aacttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaat 28856592  T
Q  118 cctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggt 198  Q
    ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||  |||||||||| |||||||||||||||||    
T  28856591 ccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaattggt 28856511  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 28861968 - 28861785
Alignment:
Q  18 aacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaa 117  Q
    ||||||||||||  |||||| |||||| |||||||| ||||| |  ||| || ||| | |||||||| ||||||| ||| | |||||||||||||||||     
T  28861968 aacttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaat 28861869  T
Q  118 cctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttgg 201  Q
    ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||   ||||| ||||||||||||||||||||||||    
T  28861868 ccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaattggttgg 28861785  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 28831495 - 28831268
Alignment:
Q  18 aacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaa 117  Q
    ||||||||||||  |||||| |||||| |||||||| ||||| || ||| ||  || | |||||||| ||||||| ||| | || ||||||||||||||     
T  28831495 aacttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaacaacaaagtatacgccataggattatgtagaggagatgttaat 28831396  T
Q  118 cctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatgaggactacatgt 217  Q
    ||  ||| ||||||| ||  ||| ||  |||||||||||||||| ||| ||  |||||||||||||||||||||||||  ||||  |||  | | |||||    
T  28831395 ccaaatgattgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaattatttggactgacaattgcatgt 28831296  T
Q  218 tgcgttactcaaaccgatcaatatttgg 245  Q
    |||||||||| || || || ||||||||    
T  28831295 tgcgttactccaatcggtccatatttgg 28831268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 28875908 - 28875835
Alignment:
Q  172 tgtccaaaccaaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttgg 245  Q
    |||||| ||| |||||||||||||||||||  |||  ||| |||| |||||||||||| ||| |||||||||||    
T  28875908 tgtccataccgaaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatttgg 28875835  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 573
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
Q  528 gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 573  Q
    |||||||  ||||||| | |||||||||||||||||||||||||||    
T  28830976 gattggtgctagagttatgaaaccaagttgtaatattagatatgaa 28830931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 1163 - 1076
Alignment:
Q  37 aactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg 124  Q
    |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  1163 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg 1076  T

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Target: scaffold0341; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 8817 - 8730
Alignment:
Q  37 aactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg 124  Q
    |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| ||||    
T  8817 aactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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