View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2018_high_84 (Length: 201)

Name: NF2018_high_84
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2018_high_84
NF2018_high_84
[»] scaffold0219 (1 HSPs)
scaffold0219 (11-201)||(8343-8533)
[»] chr4 (4 HSPs)
chr4 (17-143)||(13924795-13924923)
chr4 (29-143)||(1053900-1054016)
chr4 (17-99)||(13925611-13925695)
chr4 (17-62)||(24666853-24666898)
[»] chr1 (5 HSPs)
chr1 (29-143)||(4059968-4060084)
chr1 (17-66)||(12449309-12449358)
chr1 (28-63)||(16450465-16450500)
chr1 (28-63)||(16460041-16460076)
chr1 (17-62)||(26240872-26240917)
[»] chr8 (3 HSPs)
chr8 (30-143)||(27243461-27243576)
chr8 (30-143)||(27255036-27255151)
chr8 (20-62)||(42663998-42664040)
[»] chr5 (4 HSPs)
chr5 (14-63)||(4095874-4095923)
chr5 (17-62)||(24565575-24565620)
chr5 (17-62)||(24606611-24606656)
chr5 (14-57)||(23257973-23258016)
[»] chr2 (4 HSPs)
chr2 (17-59)||(2655731-2655773)
chr2 (17-63)||(34595934-34595980)
chr2 (28-65)||(44296873-44296910)
chr2 (17-84)||(4716851-4716919)
[»] chr7 (2 HSPs)
chr7 (17-62)||(36611495-36611540)
chr7 (11-63)||(41965108-41965160)


Alignment Details
Target: scaffold0219 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 8343 - 8533
Alignment:
Q  11 cacagatggattttagagtgagggttcaattaaatccctcactggtggaccacaaagaaatacggttggatttatcaatgcatcatatttgttggaaaca 110  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8343 cacagatggattttagagtgaaggctcaattaaatccctcactggtggaccacaaagaaatacggttggatttatcaatgcatcatatttgttggaaaca 8442  T
Q  111 aaattaagaacatctacatgtttccacatacaaggcaaatttattgataataaaataacggagtgcaaaaaatatctagagggtactaaac 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8443 aaattaagaacatctacatgtttccacatacaaggcaaatttattgataataaaataacggagtgcaaaaaatatctagagggtactaaac 8533  T

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Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 13924795 - 13924923
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggaccacaaagaaa-tacggttggattta-tcaatgcatcatatttgttggaaacaaaat 114  Q
    |||||| ||| ||||||| ||||||||||||||||| |||||||||| || ||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  13924795 tggattctagggtgagggctcaattaaatccctcaccggtggaccacgaaaaaagtacggttgaatttaatcaatgcatcatatttgttggaaacaaaat 13924894  T
Q  115 taagaacatctacatgtttccacatacaa 143  Q
    || ||||||||||||||||||| ||||||    
T  13924895 taggaacatctacatgtttccaaatacaa 13924923  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 1054016 - 1053900
Alignment:
Q  29 tgagggttcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatcta 126  Q
    |||||| ||||||||| ||||||   ||| ||||  ||||||| ||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||    
T  1054016 tgagggatcaattaaacccctcatcagtgaaccatgaagaaattacggttgaatttaatcaatggatcatatttgttgcaaacaaaattaagaacatcta 1053917  T
Q  127 catgtttccacatacaa 143  Q
     || ||||| |||||||    
T  1053916 tatctttccgcatacaa 1053900  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 13925695 - 13925611
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggaccacaaagaaa-tacggttggat-ttatcaatgcatcatatt 99  Q
    |||||| || |||||||| |||| ||| |||||||| ||||||||||||||||| ||||||| ||| | ||||||| ||||||||    
T  13925695 tggattctaaagtgagggatcaactaagtccctcaccggtggaccacaaagaaattacggttagatctaatcaatggatcatatt 13925611  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 24666898 - 24666853
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggacca 62  Q
    |||||| ||| |||||||||||||||| |||||| |||||||||||    
T  24666898 tggattatagggtgagggttcaattaagtccctccctggtggacca 24666853  T

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Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 4060084 - 4059968
Alignment:
Q  29 tgagggttcaattaaatccctcactggtggaccacaaagaaa-tacggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatcta 126  Q
    |||||| |||||||||||| |||| |||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  4060084 tgagggctcaattaaatccgtcaccggtggaccacgaagaaagtacgattggatttaatcaatgcatcatatttgttggaaacaaaattaggaacatcta 4059985  T
Q  127 catgtttccacatacaa 143  Q
    |||||||||||||||||    
T  4059984 catgtttccacatacaa 4059968  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 12449358 - 12449309
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggaccacaaa 66  Q
    |||||||||| ||||||| |||||||| |||||||| |||||||||||||    
T  12449358 tggattttagggtgagggatcaattaagtccctcaccggtggaccacaaa 12449309  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 16450500 - 16450465
Alignment:
Q  28 gtgagggttcaattaaatccctcactggtggaccac 63  Q
    |||||||||||||||||||||||||||||| |||||    
T  16450500 gtgagggttcaattaaatccctcactggtgtaccac 16450465  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 16460076 - 16460041
Alignment:
Q  28 gtgagggttcaattaaatccctcactggtggaccac 63  Q
    |||||||||||||||||||||||||||||| |||||    
T  16460076 gtgagggttcaattaaatccctcactggtgtaccac 16460041  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 26240917 - 26240872
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggacca 62  Q
    |||||| ||| |||||||||||||||| |||||||| |||||||||    
T  26240917 tggattctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 27243461 - 27243576
Alignment:
Q  30 gagggttcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatctac 127  Q
    ||||| |||||||| |||||||| |||||||||| ||||||| || |||| ||||| |||||| ||||||||| ||| |||||||||||||||||||||     
T  27243461 gagggatcaattaagtccctcaccggtggaccacgaagaaattacagttgaatttaatcaatggatcatatttattgcaaacaaaattaagaacatctat 27243560  T
Q  128 atgtttccacatacaa 143  Q
    || ||||| |||||||    
T  27243561 atctttccgcatacaa 27243576  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 27255036 - 27255151
Alignment:
Q  30 gagggttcaattaaatccctcactggtggaccacaaagaaat-acggttggattta-tcaatgcatcatatttgttggaaacaaaattaagaacatctac 127  Q
    ||||| |||||||| |||||||| |||||||||| ||||||| || |||| ||||| |||||| ||||||||| ||| |||||||||||||||||||||     
T  27255036 gagggatcaattaagtccctcaccggtggaccacgaagaaattacagttgaatttaatcaatggatcatatttattgcaaacaaaattaagaacatctat 27255135  T
Q  128 atgtttccacatacaa 143  Q
    || ||||| |||||||    
T  27255136 atctttccgcatacaa 27255151  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 42664040 - 42663998
Alignment:
Q  20 attttagagtgagggttcaattaaatccctcactggtggacca 62  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  42664040 attttagggtgagggttcaattaagtccctcactggtggacca 42663998  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 4095923 - 4095874
Alignment:
Q  14 agatggattttagagtgagggttcaattaaatccctcactggtggaccac 63  Q
    ||||||||||||| |||||||| |||||||||||||||| | ||||||||    
T  4095923 agatggattttagggtgagggtccaattaaatccctcaccgatggaccac 4095874  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 24565575 - 24565620
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggacca 62  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||    
T  24565575 tggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 24606611 - 24606656
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggacca 62  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||    
T  24606611 tggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 23258016 - 23257973
Alignment:
Q  14 agatggattttagagtgagggttcaattaaatccctcactggtg 57  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  23258016 agatggattttagggtgagggatcaattaaatctctcactggtg 23257973  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 2655731 - 2655773
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtgga 59  Q
    |||||||||  ||||||||||||||||||||||||||| ||||    
T  2655731 tggattttaaggtgagggttcaattaaatccctcactgatgga 2655773  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 34595980 - 34595934
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggaccac 63  Q
    |||||| |||||||||||||||| |||||||||||| |||| |||||    
T  34595980 tggattctagagtgagggttcaactaaatccctcaccggtgtaccac 34595934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 44296873 - 44296910
Alignment:
Q  28 gtgagggttcaattaaatccctcactggtggaccacaa 65  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  44296873 gtgagggtccaattaagtccctcactggtggaccacaa 44296910  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 4716919 - 4716851
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggaccac-aaagaaatacggttggattta 84  Q
    |||||| ||| |||||||| ||||||||| | ||||||||||||||| || ||||| | ||||||||||    
T  4716919 tggattctagggtgagggtccaattaaattcttcactggtggaccacgaatgaaatgcagttggattta 4716851  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 36611540 - 36611495
Alignment:
Q  17 tggattttagagtgagggttcaattaaatccctcactggtggacca 62  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||    
T  36611540 tggattctagggtgagggttcaattaaatctctcaccggtggacca 36611495  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 41965108 - 41965160
Alignment:
Q  11 cacagatggattttagagtgagggttcaattaaatccctcactggtggaccac 63  Q
    ||||| |||||| ||| |||||||| ||||||| ||||||| |||||||||||    
T  41965108 cacaggtggattctagggtgagggtccaattaagtccctcattggtggaccac 41965160  T

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