View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_1 (Length: 992)
Name: NF2018_low_1
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_1 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
| [»] scaffold0729 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 779; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 177 - 976
Target Start/End: Complemental strand, 15802229 - 15801430
Alignment:
| Q |
177 |
ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802229 |
ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac |
15802130 |
T |
|
| Q |
277 |
taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatag |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15802129 |
taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtaaaaaaacatttctgaaacatag |
15802030 |
T |
|
| Q |
377 |
ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggccagtacatcaactacatcttca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802029 |
ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggccagtacatcaactacatcttca |
15801930 |
T |
|
| Q |
477 |
aaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgt |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801929 |
aaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgt |
15801830 |
T |
|
| Q |
577 |
tattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctct |
676 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801829 |
tattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctct |
15801730 |
T |
|
| Q |
677 |
atccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttga |
776 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801729 |
atccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttga |
15801630 |
T |
|
| Q |
777 |
tcattgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtc |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801629 |
tcattgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtc |
15801530 |
T |
|
| Q |
877 |
caccacaataggaaactacatctccggagagtatgaggaaagcttcacttggattcgcctccttaaacgcatgccagttgaaaagcctacgagattcgtg |
976 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801529 |
caccacaataggaaactacatctccggagagtatgaggaaagcttcacttggattcgcctccttaaacgcatgccagttgaaaagcctacgagattcgtg |
15801430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 434 - 900
Target Start/End: Complemental strand, 12596727 - 12596254
Alignment:
| Q |
434 |
aattcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatt |
533 |
Q |
| |
|
|||||||||||| || |||| || ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12596727 |
aattcttacggtatggtcggtcaatacatcaactacatcttcatggcaccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatt |
12596628 |
T |
|
| Q |
534 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcag-------cacttctattcca |
626 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
12596627 |
tctcttcccatgtcttgtagcaaagcattcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattcca |
12596528 |
T |
|
| Q |
627 |
atatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttcca |
726 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
12596527 |
atatccgcttgaagatcacacccatttagtatctctgtaacataagcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttcca |
12596428 |
T |
|
| Q |
727 |
tatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacactctgccactctcgttt |
826 |
Q |
| |
|
|| ||||| |||||| || || |||||||||||||||| |||||||| ||||||| ||||||||| |||||| |||| |||||||||||||||| |||| |
|
|
| T |
12596427 |
tacgatcccttaaaccttcgaaacttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgataatacactctgccactcttgttt |
12596328 |
T |
|
| Q |
827 |
tctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactacatctc |
900 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||||| | || |||| ||||||||||| |
|
|
| T |
12596327 |
tctcctcttgaacaagtaagacccaaggacttcaagagctagtggtagtccatcgcagtaggcaactacatctc |
12596254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 15802397 - 15802258
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15802397 |
acattatcaagttgcaacaatcgcaatttcttcattttcttaagagcaattgtattgaagcaaactctactggtcctttgcgacttcaaaaccaatccct |
15802298 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagaccatag |
148 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15802297 |
cgatggcttttgttccctgtgacacaaagaaagaccatag |
15802258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 515 - 723
Target Start/End: Complemental strand, 30416840 - 30416632
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||| |||||| | |||||| || |
|
|
| T |
30416840 |
tgaattttgacgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctatgagg |
30416741 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| |||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
30416740 |
acagatattccaatactagcaaaaagtccacagccatttagaatctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaata |
30416641 |
T |
|
| Q |
715 |
tattctttt |
723 |
Q |
| |
|
||| ||||| |
|
|
| T |
30416640 |
tatcctttt |
30416632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 515 - 751
Target Start/End: Complemental strand, 20837369 - 20837133
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||||| |||||| | |||||| || |
|
|
| T |
20837369 |
tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgaga |
20837270 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||||||||| |
|
|
| T |
20837269 |
atagatattccaatatcagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaata |
20837170 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagct |
751 |
Q |
| |
|
| | || || | ||| ||| |||||||||||| |||| |
|
|
| T |
20837169 |
tgtcctgtttcgtataatcttctaaaccatcatagct |
20837133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 515 - 751
Target Start/End: Complemental strand, 20811014 - 20810778
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||||| |||||| | |||||| || |
|
|
| T |
20811014 |
tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgaga |
20810915 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||||||||| |
|
|
| T |
20810914 |
atagatattccactataagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaata |
20810815 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagct |
751 |
Q |
| |
|
| | ||||| | ||| ||| |||||||||||| |||| |
|
|
| T |
20810814 |
tgtccttttgcgtataatcttctaaaccatcatagct |
20810778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 295 - 897
Target Start/End: Original strand, 3392537 - 3393138
Alignment:
| Q |
295 |
tggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatagttttatttttatcttcaa |
394 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||| || |
|
|
| T |
3392537 |
tggacagacacatgtgagataatgaatcccacaattttcagccaatagattggaaaagtaaata--catttctgaaacatagtttt--tgttatctttaa |
3392632 |
T |
|
| Q |
395 |
agatcgtgaaggatgacaaaaattcaaaatgcaatgtaga---attcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcga |
491 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||| ||||||||| ||||||||||| || || ||||||||| |||||| || ||| |||||||||||| |
|
|
| T |
3392633 |
agatagtgaaagatgacaaacattcaaaatacaatgtagagaaattcttacggtatggtcttccagtacattaactacgtcctcatgacaccacaatcgg |
3392732 |
T |
|
| Q |
492 |
gtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaactt |
591 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
3392733 |
gtacgcttctcaggctcctccggtgaactttcacgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagctttttattcttttcaactt |
3392832 |
T |
|
| Q |
592 |
ttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaa |
691 |
Q |
| |
|
||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
3392833 |
ttatgaggcttctctctatcaacactgttattccaatatcagcatgaagtccacaaccatttagtatctttgtaacataagctctatccttgccgataaa |
3392932 |
T |
|
| Q |
692 |
gaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttt |
791 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||| |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
3392933 |
gaaacaacagacatcaagaaatatatccttttccatacgatcgcttaaaccattaaagctaatttttagtttctcatgtatttgatcattgggtattttt |
3393032 |
T |
|
| Q |
792 |
tgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaa |
891 |
Q |
| |
|
| ||||| |||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
3393033 |
tcaagctttgataatacactctgccactcttgttttctcctcttcaataagtaagatccaaggacttcaagagctagtggtattccaccacaataggcaa |
3393132 |
T |
|
| Q |
892 |
ctacat |
897 |
Q |
| |
|
|||||| |
|
|
| T |
3393133 |
ctacat |
3393138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 295 - 900
Target Start/End: Complemental strand, 3363347 - 3362742
Alignment:
| Q |
295 |
tggacaaacactt-gtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaacatagttttatttttatcttca |
393 |
Q |
| |
|
|||||| |||||| |||| || ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| | ||||||| | |
|
|
| T |
3363347 |
tggacagacacttagtgaaataatgaatcccacaattttcagccaatagattggaaaattaaaaa--catttctgaaacatagtttt--tgttatcttta |
3363252 |
T |
|
| Q |
394 |
aagatcgtgaaggatgacaaaaattcaaaatgcaatgtag---aattcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcg |
490 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||||||| |||||||||||| | || |||||||||| |||||| || ||| ||||||||||| |
|
|
| T |
3363251 |
aagatagtgaaaaatgacaaaagttcaaaatgcaatgtactgaaattcttacggtatagtctgccagtacattaactacgtcctcatggcaccacaatcg |
3363152 |
T |
|
| Q |
491 |
agtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaact |
590 |
Q |
| |
|
||| | || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
3363151 |
ggtatgcttttcaggctcctccggtgaactttcacgaacaatttcccttcccatgtctcgtagcaaagcatgcattccaagctttttattcttttcaact |
3363052 |
T |
|
| Q |
591 |
tttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataa |
690 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3363051 |
tttatgaggcttctctctatcaacactgttattccaatatcagcattaagtccacaaccatttagtatctttgtaacataagctctatccttaccgataa |
3362952 |
T |
|
| Q |
691 |
agaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatctt |
790 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3362951 |
agaaacagcagacatcaagaaatatattcttttccatacgatcctttaaaccatcaaagcttatttttagtatctcgtgtatttgatcattgggtatctt |
3362852 |
T |
|
| Q |
791 |
ttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaa |
890 |
Q |
| |
|
|| |||||| |||| ||||||| |||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
3362851 |
ttctagctttgataatacactccgccactcttgttttttcctcttgaacaagtaagatccaaggacttcaagagctagtggtattccaccacaataggca |
3362752 |
T |
|
| Q |
891 |
actacatctc |
900 |
Q |
| |
|
|||||||||| |
|
|
| T |
3362751 |
actacatctc |
3362742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 414 - 950
Target Start/End: Complemental strand, 3313861 - 3313322
Alignment:
| Q |
414 |
aaattcaaaatgcaatgtaga---attcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcct |
510 |
Q |
| |
|
||||||||||||||||||||| |||||||| || || |||| |||||||||||||||||| ||| | ||||||||||| |||| || |||||||||| |
|
|
| T |
3313861 |
aaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatcctcatgataccacaatcgactacgcttttcaggctcct |
3313762 |
T |
|
| Q |
511 |
caggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctat |
610 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||| || | | ||||||||||||||||||||| |||||||| ||||| ||||||| ||| || |
|
|
| T |
3313761 |
caggtgaactttcacggacaatttctcgtcccatgtctcgcagtaaatcatgcattccaagcttgttatacttttcaatttttattaggcttcgctcaat |
3313662 |
T |
|
| Q |
611 |
cagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaaga |
710 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3313661 |
cagcactgttattccaatatcagcatgaagtccacaaccatttagtatatttgtgacatatgctctatccttaccgataaagaaacaacacacatcaaga |
3313562 |
T |
|
| Q |
711 |
aatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacac |
810 |
Q |
| |
|
||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||| ||||| |
|
|
| T |
3313561 |
aatatatccttttccatatgatcccttaaaccgtcaaagcttatttttagtttctcatgtatttgatcattaggtatcttttctagctttgataatacac |
3313462 |
T |
|
| Q |
811 |
tctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactacatctccggagagtat |
910 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || || || || |
|
|
| T |
3313461 |
tctgccactcttgttttctcctcttgaacaagtaagatccaaggacttcaagagctagtggcagtccaccacaataggcaactacatatcttgaaagaat |
3313362 |
T |
|
| Q |
911 |
gaggaaagcttcacttggattcgcctccttaaacgcatgc |
950 |
Q |
| |
|
|||||| |||| ||||| | | |||| ||||||||||| |
|
|
| T |
3313361 |
aaggaaaccttctattggacttgtctccctaaacgcatgc |
3313322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 515 - 886
Target Start/End: Original strand, 3408490 - 3408861
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||||||| | ||||| || |
|
|
| T |
3408490 |
tgaactttcacggacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttctcaacttttaggaggctccggtctatgagg |
3408589 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| || || |||||||| |||||||||||||| | |||||||||| |
|
|
| T |
3408590 |
accgctattccaatatcagcataaagtccacagccatttagtatctctgtaacataggccctgtccttaccaataaagaaacaacaaatgtcaagaaata |
3408689 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacactctg |
814 |
Q |
| |
|
||| |||| |||||| ||||| |||||||||| |||||||| | || |||||||| | |||||||||||| || | | || ||| |||| ||| || |
|
|
| T |
3408690 |
tatcctttaccatatcatcctttaaaccatcatagcttattctcagcttctcgtgcacttgatcattgggaattctctctaactttgatagtacgcttat |
3408789 |
T |
|
| Q |
815 |
ccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaata |
886 |
Q |
| |
|
||| ||| ||||| |||| | |||||||| |||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
3408790 |
ccattcttgttttgtcctctcaaataagtaggatccaaggacttcaagagccagtggtaaccctccacaata |
3408861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 515 - 895
Target Start/End: Original strand, 7165837 - 7166217
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| | ||||| | ||||| || |
|
|
| T |
7165837 |
tgaactttggcgaacaatttctcttcccatgtctctaagcaaatcatgcattccaagcttgttattcttttcaattttcacaaggctccgctctacgagg |
7165936 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
7165937 |
accgttattccaatgtcagcataaagtccacaaccatttagtatctcagtaacataggctctatccttgccgataaagaaacaacatatatcaagaaata |
7166036 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacactctg |
814 |
Q |
| |
|
||| |||| |||||| ||||| |||||| ||| |||||||| | |||||||| || | |||||||||||| || | | || || | | |||||| | |
|
|
| T |
7166037 |
tatcctttgccatatcatcctttaaaccgtcatagcttattctcagtttctcttgcacttgatcattgggaattctctctaatttcaagagtacactttc |
7166136 |
T |
|
| Q |
815 |
ccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactac |
895 |
Q |
| |
|
||| ||| ||||| |||| | |||||||||| || | |||||||||||| ||||||| ||| |||||||||| |||||| |
|
|
| T |
7166137 |
ccattcttgttttgtcctcccgtataagtaagaaccgatgacttcaagagccagtggtaatcctccacaataggcaactac |
7166217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 516 - 784
Target Start/End: Original strand, 3326154 - 3326422
Alignment:
| Q |
516 |
gaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagca |
615 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||| ||||| | |||||| || | |
|
|
| T |
3326154 |
gaactttcacgaataatttctcttcccatgtctcttatcaaacaatgcattccaagcttgttattcttttcaatttttacaaggctccgctctatgagaa |
3326253 |
T |
|
| Q |
616 |
cttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatat |
715 |
Q |
| |
|
| ||||||||||| |||| ||||||||| |||||||||||||||||||| | ||||||||||| || |||||||||||||| | ||||||||||| |
|
|
| T |
3326254 |
cacttattccaatatttgcataaagtccacagccatttagtatctctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaatat |
3326353 |
T |
|
| Q |
716 |
attcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg |
784 |
Q |
| |
|
|| |||||||||| ||||| ||||||||| |||| ||| | |||||||| || | |||||||||||| |
|
|
| T |
3326354 |
atctttttccatatcatcctttaaaccatcgtagctaattctcagtttctcttgcacttgatcattggg |
3326422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 481 - 787
Target Start/End: Original strand, 3268362 - 3268668
Alignment:
| Q |
481 |
accacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttatt |
580 |
Q |
| |
|
||||||||||| |||| ||| ||||||| | ||| |||| ||||||||| |||||||||||||||| ||||| | |||||||||||| |||||| | |
|
|
| T |
3268362 |
accacaatcgactacgcttcccaggctcttttattgatcttttacgaacaatctctcttcccatgtctcttagcaaactatgcattccaagtttgttact |
3268461 |
T |
|
| Q |
581 |
cttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatcc |
680 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || || |||||||||| |||||| || |||| |||| || ||||||| |||||| ||||| ||| |
|
|
| T |
3268462 |
cttttcaatttttaggaggcttctctctatgaggacagttattccaataccagcataaaagtcacaaccatctataatctctgaaacatatgctctgtcc |
3268561 |
T |
|
| Q |
681 |
ttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcat |
780 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||| |||||| ||| || || |||||||||| |||||||| |||||||||| || | || ||||| |
|
|
| T |
3268562 |
ttaccaataaagaaacaacatatgtcaagaaatatatccttttctgtatcattctttaaaccatcatagcttattcttagtttctcatgcactttatcat |
3268661 |
T |
|
| Q |
781 |
tgggtat |
787 |
Q |
| |
|
|||||| |
|
|
| T |
3268662 |
cgggtat |
3268668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 515 - 784
Target Start/End: Original strand, 3287625 - 3287894
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | | |||||||| |||||||||||| || ||||||||||||||||| | ||||| || |
|
|
| T |
3287625 |
tgaactttcacgaacaatttctcttcccatatctcttattaaatcatgcatttcaagcttgttataattgtcaacttttaggaggctccgctctacgagg |
3287724 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
||| ||||||| | ||||||| ||||||||| ||||||||||||||||| ||||| | ||| |||||||| |||||||||||||| | |||||||||| |
|
|
| T |
3287725 |
actgttattccagtgtcagcatcaagtccacagccatttagtatctctgtgacataggttctgtccttaccaataaagaaacaacaaatgtcaagaaata |
3287824 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg |
784 |
Q |
| |
|
||| ||||||||||| | | ||| |||||| |||||||| | ||||| || || ||||||| |||||| |
|
|
| T |
3287825 |
tatccttttccatatcttgatttaacccatcatagcttattctcagtttttcttggatttgatgattggg |
3287894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 515 - 784
Target Start/End: Original strand, 3263698 - 3263967
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | | |||||||||||| |||||||||||||| | ||||| ||||| | ||||| || |
|
|
| T |
3263698 |
tgaactttcacaaacaatttctcttcccatgtctcttattaaatcatgcattccaattttgttattcttttccatttttacaaggctccgttctatgagg |
3263797 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
| ||||||||||| |||||||||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||||||||| | |||||||||| |
|
|
| T |
3263798 |
atcgctattccaataacagcatgaagtccacagccattaagtatctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtcaagaaata |
3263897 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg |
784 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| | |||||| | || ||||| || | |||||||||||| |
|
|
| T |
3263898 |
tatccttttccataccatcctttaaaccatcgtaacttattctcagcttctcttgcacttgatcattggg |
3263967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 3392245 - 3392380
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||| ||||| || ||||||||| ||||||||||| |
|
|
| T |
3392245 |
acattatcaagttgcaacaatctcaatctcttcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct |
3392344 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagacc |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3392345 |
cgatggcttttgttccctgtgacacaaagaaagacc |
3392380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 515 - 715
Target Start/End: Original strand, 3399790 - 3399990
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||| | |||||| || |
|
|
| T |
3399790 |
tgaactttcaccagcaattgctcttcccatgtctctgagcaaatcatgcattccaagcttgttattcttttcgacttttaggaggctgcgctctatgaga |
3399889 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||||||||| |
|
|
| T |
3399890 |
atagatattccaatatcagcatgaagtccacatgcattaagtatctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtcaagaaata |
3399989 |
T |
|
| Q |
715 |
t |
715 |
Q |
| |
|
| |
|
|
| T |
3399990 |
t |
3399990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 515 - 757
Target Start/End: Complemental strand, 13786545 - 13786303
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||| | |||||||||| |||||| | |||||| || |
|
|
| T |
13786545 |
tgaactttcacgaacaatttctcttcccatgtctcttattaacttatgcattccaagggtgttattgtcctcaacttttaagaggctccgctctatgagg |
13786446 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||| ||| |||||||||||||| | |||||||||| |
|
|
| T |
13786445 |
acagctattccaatatcagcacaaagtccacagccatttagtatctctgtaacataggctttgtcctcaccaataaagaaacaacatatgtcaagaaata |
13786346 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagcttatttt |
757 |
Q |
| |
|
| |||| |||||| |||| |||||||||| | |||||||| |
|
|
| T |
13786345 |
cagcctttaccatatcatccattaaaccatcataacttatttt |
13786303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 3363639 - 3363504
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||| | ||||||||| |||||||||||||| |||||||||||| ||||| || ||||||||| ||||||||||| |
|
|
| T |
3363639 |
acattatcaagttgcaacaatctcaatctaatcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct |
3363540 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagacc |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3363539 |
cgatggcttttgttccctgtgacacaaagaaagacc |
3363504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 527 - 724
Target Start/End: Complemental strand, 31174746 - 31174549
Alignment:
| Q |
527 |
aacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattcca |
626 |
Q |
| |
|
||||||| ||||||||||||||| |||| | |||||||| |||||||||||| || |||||||||| |||||| | ||| || || || |||||||| |
|
|
| T |
31174746 |
aacaattgctcttcccatgtctctgagcaaatcatgcatttgaagcttgttatttttatcaacttttatgaggctgcgctcaatgaggacaactattcca |
31174647 |
T |
|
| Q |
627 |
atatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttc |
724 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||| |||||| | ||| || || ||||||||||| | ||||||||||||| |||||| |
|
|
| T |
31174646 |
atatcagcatgaagcccacagccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttc |
31174549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 3314328 - 3314192
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||| |||| | |||| || ||| | ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
3314328 |
acatgatcaagttgcaacaatctcaatctcttcattttctcaaaaccgattgcatcgaaaccaactctactggacctttgcaacttcataaccaatccct |
3314229 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagaccata |
147 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
3314228 |
cgatggcttttgttccctgtgacac--agaaagaccata |
3314192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 481 - 716
Target Start/End: Complemental strand, 13807838 - 13807603
Alignment:
| Q |
481 |
accacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttatt |
580 |
Q |
| |
|
||||||||||| |||| ||| || ||||||| ||| |||| || |||||| |||||||||||||||||||| | | ||||||||||||| || | ||| |
|
|
| T |
13807838 |
accacaatcgactacgcttcccaagctcctcttctgatcttttacaaacaatctctcttcccatgtctcgtagtaaaccatgcattccaagtttatcatt |
13807739 |
T |
|
| Q |
581 |
cttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatcc |
680 |
Q |
| |
|
|||||| |||||||| ||||| | |||||| || | |||||| |||||||||| ||||||||| |||| ||| ||||||| |||||| ||||| | | |
|
|
| T |
13807738 |
cttttcgacttttagaaggctccgctctatgaggatagttattcccatatcagcattaagtccacaaccatctagaatctctgaaacataggctctcttc |
13807639 |
T |
|
| Q |
681 |
ttaccgataaagaaacaacagacatcaagaaatata |
716 |
Q |
| |
|
|| ||||||||||||||||| | |||||||||||| |
|
|
| T |
13807638 |
tttccgataaagaaacaacaaatgtcaagaaatata |
13807603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 3363425 - 3363373
Alignment:
| Q |
241 |
cccaatcatatataaaatgacatttttctcatgaactaacttctccaaaaactt |
294 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
3363425 |
cccaattatatataaaatgacatcattctcatgaactaac-tctccaaaaactt |
3363373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 3392459 - 3392510
Alignment:
| Q |
241 |
cccaatcatatataaaatgacatttttctcatgaactaacttctccaaaaact |
293 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
3392459 |
cccaattatatataaaatgacatcattctcatgaactaac-tctccaaaaact |
3392510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 886
Target Start/End: Complemental strand, 13807496 - 13807433
Alignment:
| Q |
823 |
gttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaata |
886 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
13807496 |
gttttgtcctatcaaataagtaagatccaatttcttcaagagctagtggtaatcctccacaata |
13807433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 841 - 895
Target Start/End: Original strand, 3287951 - 3288005
Alignment:
| Q |
841 |
agtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactac |
895 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
3287951 |
agtaagaaccaatgacttctagagctagtggtaatcctccacaataagaaactac |
3288005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 515 - 781
Target Start/End: Original strand, 32412133 - 32412399
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| ||||||| |||| || |
|
|
| T |
32412133 |
tgaactctgacggacaatttctcttcccatgtctcttagcagatcatgcattccaagtttgttattcttttcaatttttacaaggcttcgttctacgaga |
32412232 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| ||||||||| ||||||| |||||||| |||||||||||||| |||||||| || || ||||| |||||||||||| |||| | |||||||||| |
|
|
| T |
32412233 |
accgttattccaatgtcagcataaagtccacgcccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaata |
32412332 |
T |
|
| Q |
715 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcatt |
781 |
Q |
| |
|
||| ||||||||||| ||||| |||||| ||| |||||||| |||||||||| |||| ||| ||||| |
|
|
| T |
32412333 |
tatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcatt |
32412399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 515 - 716
Target Start/End: Original strand, 6907020 - 6907221
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
6907020 |
tgaacttccacgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaaaaggctcctctctatgagg |
6907119 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| ||||||| ||| ||||| ||||||||| || ||||||||||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6907120 |
acagctattcctataccagcaaaaagtccacaaccgtttagtatctcggtaacatagtctctgtccttgccgataaagaaacaacatacatcaagaaata |
6907219 |
T |
|
| Q |
715 |
ta |
716 |
Q |
| |
|
|| |
|
|
| T |
6907220 |
ta |
6907221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 102; Significance: 4e-50; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 515 - 716
Target Start/End: Original strand, 7426 - 7627
Alignment:
| Q |
515 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
614 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||| || | | |||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |
|
|
| T |
7426 |
tgaacttccgcgaactatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcgacttttagaaggctcctctctatgagg |
7525 |
T |
|
| Q |
615 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
714 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| |||||||||||||| |||||||| || | ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
7526 |
acagctattccaatatcagcaaaaagtccacaaccatttagtatctcggtaacatagtctttgtccttgccgataaagaaacaacatacatcaagaaata |
7625 |
T |
|
| Q |
715 |
ta |
716 |
Q |
| |
|
|| |
|
|
| T |
7626 |
ta |
7627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 484 - 744
Target Start/End: Original strand, 14768056 - 14768317
Alignment:
| Q |
484 |
acaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattctt |
583 |
Q |
| |
|
|||||||| |||| || ||||||| | |||||||||| ||| |||||||||||||||||||| | || || | |||||||| ||||||||||||||| |
|
|
| T |
14768056 |
acaatcgactacgctttccaggctcttttggtgaactttgacggacaatttctcttcccatgtcccatatcaaatcatgcatttgaagcttgttattctt |
14768155 |
T |
|
| Q |
584 |
ttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaac-ataagctctatcctt |
682 |
Q |
| |
|
| ||||||||| |||||| | ||||| || || ||||||||||||||||| ||||||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
14768156 |
tacaacttttaagaggctccgttctatgaggacagatattccaatatcagcataaagtccacatccatttaatatctctgtaacgttaggctctatcctt |
14768255 |
T |
|
| Q |
683 |
accgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccat |
744 |
Q |
| |
|
|| ||||||||| |||| | ||||||||||||| ||||| | || |||||||||||||| |
|
|
| T |
14768256 |
gccaataaagaaaaaacatatgtcaagaaatatatccttttttaaatcatcctctaaaccat |
14768317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 479 - 751
Target Start/End: Original strand, 8372864 - 8373136
Alignment:
| Q |
479 |
acaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtta |
578 |
Q |
| |
|
||||||||||||| || | || |||||||| | | ||||||||| | || ||| ||||||||||||| ||||| | | ||||||| || ||||||| |
|
|
| T |
8372864 |
acaccacaatcgactatgcttttcaggctcttttgctgaactttcgctgacgattgctcttcccatgtcgcgtagtaaatcatgcatctgaaacttgtta |
8372963 |
T |
|
| Q |
579 |
ttcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctat |
678 |
Q |
| |
|
||||| |||||||||| |||||| | |||||| || || || |||||||||||||||||||||||| ||||| || |||||||| |||| | |||| | |
|
|
| T |
8372964 |
ttcttatcaacttttatgaggctacgctctataagaacagatactccaatatcagcatgaagtccacaaccattaaggatctctgtgacatcaactctgt |
8373063 |
T |
|
| Q |
679 |
ccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct |
751 |
Q |
| |
|
||| || || ||||||||||| | ||||||||||||| |||||| ||| ||| |||||||||||| |||| |
|
|
| T |
8373064 |
tctttccaatgaagaaacaacatatgtcaagaaatatatccttttctgtataatcttctaaaccatcatagct |
8373136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 838 - 873
Target Start/End: Original strand, 8373223 - 8373258
Alignment:
| Q |
838 |
ataagtaagatccaaggacttcaagagctagtggta |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8373223 |
ataagtaagatccaaggacttcaagagctagtggta |
8373258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 649 - 751
Target Start/End: Original strand, 31060156 - 31060258
Alignment:
| Q |
649 |
catttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaa |
748 |
Q |
| |
|
|||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||| |||||||| |||| ||||| ||| ||||||||||| || |
|
|
| T |
31060156 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaaaaaatatatcctttaacatataatcttctaaaccatcgaa |
31060255 |
T |
|
| Q |
749 |
gct |
751 |
Q |
| |
|
||| |
|
|
| T |
31060256 |
gct |
31060258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 577
Target Start/End: Original strand, 5261431 - 5261486
Alignment:
| Q |
522 |
tcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
||||||||||||||||||||||| ||||| | || | |||||||||||||| |||| |
|
|
| T |
5261431 |
tcacgaacaatttctcttcccatatctcgcaacaaaccatgcattccaagcatgtt |
5261486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 577
Target Start/End: Original strand, 5285430 - 5285485
Alignment:
| Q |
522 |
tcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||| | |||||||||||||| |||| |
|
|
| T |
5285430 |
tcacgaacaattcctcttcccatatctcgcagcaaaccatgcattccaagcatgtt |
5285485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 577
Target Start/End: Original strand, 5075014 - 5075071
Alignment:
| Q |
520 |
tttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
||||||||| |||||||||||||| || || |||| | ||||||||||||||||||| |
|
|
| T |
5075014 |
tttcacgaatgatttctcttcccatatcacgcagcaaatcatgcattccaagcttgtt |
5075071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 534 - 582
Target Start/End: Original strand, 5645 - 5693
Alignment:
| Q |
534 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattct |
582 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
5645 |
tctcttgccatggcttgtagcagaacatgcattccaagcttgttattct |
5693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 493 - 577
Target Start/End: Complemental strand, 4351975 - 4351891
Alignment:
| Q |
493 |
tacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4351975 |
tacgttcctcaggctcctttggtgatttctcacgaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtt |
4351891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 534 - 582
Target Start/End: Complemental strand, 6792984 - 6792936
Alignment:
| Q |
534 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattct |
582 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
6792984 |
tctcttgccatggcttgtagcagaacatgcattccaagcttgttattct |
6792936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 577
Target Start/End: Original strand, 4135079 - 4135122
Alignment:
| Q |
534 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
4135079 |
tctcttcccatatctcgtagcaaatcatgcattccaagcttgtt |
4135122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 436 - 577
Target Start/End: Complemental strand, 4334355 - 4334214
Alignment:
| Q |
436 |
ttcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttc |
535 |
Q |
| |
|
||||||| || ||||| | || |||||||| ||||| ||| | ||||||| | | |||||| |||||||||| ||||| | ||||||| ||||| |
|
|
| T |
4334355 |
ttcttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc |
4334256 |
T |
|
| Q |
536 |
tcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4334255 |
tcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
4334214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 500 - 577
Target Start/End: Complemental strand, 4359149 - 4359072
Alignment:
| Q |
500 |
ctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
577 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4359149 |
ctcaggctcctttggtgatttctcacgaatgatttctcttcccatatctcggagcaaatcatgcatgccaagcttgtt |
4359072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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