View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2018_low_11 (Length: 534)
Name: NF2018_low_11
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 501
Target Start/End: Original strand, 2471917 - 2472430
Alignment:
| Q |
7 |
attcaacatcatcaaatcattttatctttaaaaataacatcaattgtgtgaatgtgtctaaacctttttaaatttgagtttgttcccaagcaagcatttc |
106 |
Q |
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| T |
2471917 |
attcaacatcatcaaatcatattatctttaaaaataacatcaattgtgtgaatgtgtctaaacctttt-aaatttgagtttgttcccaagcaagcatttc |
2472015 |
T |
|
| Q |
107 |
tcaaggcattgtaggactaattgaaatattaggacaaatatgaatgatattttaccacaaatatgtcccnnnnnnnaggggataaagatgtcacttgact |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
2472016 |
tcaaggcattgtaggactaattgaaatattaggacaaatatgaatgatattttaccacaaatatgtcactttttttaggggataaatatgtcacttgact |
2472115 |
T |
|
| Q |
207 |
acataatcgttttaaggcattgtaagtaactaactgcattcacttataatatctcatgttgaaattcgaagctgatcaagttgctacattgtggaataca |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2472116 |
acataatctttttaaggcattgtaagtaactaactgcattcacttataatatctcatgttgaaattcgaagctgatcaagttgctacattgtggaataca |
2472215 |
T |
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| Q |
307 |
ttcatctttcgttatatccaaattcttttggtatgtgttcgtaatttttatgtgtatacgtaatatatatat--------------------aataaacc |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2472216 |
ttcatctttcgttatatccaaattcttttggtatgtgttcgtaatttttatgtgtatacgtaatatatatatatatatatatatatatataaaataaacc |
2472315 |
T |
|
| Q |
387 |
acaatatcagaaaatgtatgaatatttttactactgaatagtaactcatacttagaacgggtcagtcaaactactaatatttatacgtagaaaataaatt |
486 |
Q |
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| T |
2472316 |
acaatatcagaaaatgtatgaatatttttactactgaatagtaactcatacttagaacgggtcagtcaaactactaatatttatacgtagaaaataaatt |
2472415 |
T |
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| Q |
487 |
attgtattttttggc |
501 |
Q |
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||||||||||||||| |
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| T |
2472416 |
attgtattttttggc |
2472430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 55740384 - 55740352
Alignment:
| Q |
25 |
attttatctttaaaaataacatcaattgtgtga |
57 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
55740384 |
attttatctttaaaaaaaacatcaattgtgtga |
55740352 |
T |
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