View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2018_low_12 (Length: 534)
Name: NF2018_low_12
Description: NF2018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2018_low_12 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
| [»] scaffold0729 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 518
Target Start/End: Complemental strand, 15801938 - 15801430
Alignment:
| Q |
10 |
acatcatcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattc |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801938 |
acatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattc |
15801839 |
T |
|
| Q |
110 |
caagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801838 |
caagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaac |
15801739 |
T |
|
| Q |
210 |
ataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801738 |
ataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcg |
15801639 |
T |
|
| Q |
310 |
tgtatttgatcattgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagcta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801638 |
tgtatttgatcattgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagcta |
15801539 |
T |
|
| Q |
410 |
gtggtagtccaccacaataggaaactacatctccggagagtatgaggaaagcttcacttggattcgcctccttaaacgcatgccagttgaaaagcctacg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15801538 |
gtggtagtccaccacaataggaaactacatctccggagagtatgaggaaagcttcacttggattcgcctccttaaacgcatgccagttgaaaagcctacg |
15801439 |
T |
|
| Q |
510 |
agattcgtg |
518 |
Q |
| |
|
||||||||| |
|
|
| T |
15801438 |
agattcgtg |
15801430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 22 - 442
Target Start/End: Complemental strand, 12596681 - 12596254
Alignment:
| Q |
22 |
caccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttat |
121 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
12596681 |
caccacaatcgactacacttctcaggctcctcaggtgaactttcgcgaacaatttctcttcccatgtcttgtagcaaagcattcattccaagcttgttat |
12596582 |
T |
|
| Q |
122 |
tcttttcaacttttaggaggcttctctctatcag-------cacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataag |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||||||||||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12596581 |
tcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagatcacacccatttagtatctctgtaacataag |
12596482 |
T |
|
| Q |
215 |
ctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtat |
314 |
Q |
| |
|
| |||||||||||||||||||||||||| | |||||||||||||| |||||||||| ||||| |||||| || || |||||||||||||||| |||||| |
|
|
| T |
12596481 |
cactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaaccttcgaaacttatttttagtttcttgtgtat |
12596382 |
T |
|
| Q |
315 |
ttgatcattgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggt |
414 |
Q |
| |
|
|| ||||||| ||||||||| |||||| |||| |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
12596381 |
ttcatcattgagtatcttttttagctttgataatacactctgccactcttgttttctcctcttgaacaagtaagacccaaggacttcaagagctagtggt |
12596282 |
T |
|
| Q |
415 |
agtccaccacaataggaaactacatctc |
442 |
Q |
| |
|
|||||| | || |||| ||||||||||| |
|
|
| T |
12596281 |
agtccatcgcagtaggcaactacatctc |
12596254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 57 - 265
Target Start/End: Complemental strand, 30416840 - 30416632
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||| |||||| | |||||| || |
|
|
| T |
30416840 |
tgaattttgacgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaagaggctccgctctatgagg |
30416741 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| |||||||||| |||| ||||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
30416740 |
acagatattccaatactagcaaaaagtccacagccatttagaatctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaata |
30416641 |
T |
|
| Q |
257 |
tattctttt |
265 |
Q |
| |
|
||| ||||| |
|
|
| T |
30416640 |
tatcctttt |
30416632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 57 - 293
Target Start/End: Complemental strand, 20837369 - 20837133
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||||| |||||| | |||||| || |
|
|
| T |
20837369 |
tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgaga |
20837270 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||||||||| |
|
|
| T |
20837269 |
atagatattccaatatcagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaata |
20837170 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagct |
293 |
Q |
| |
|
| | || || | ||| ||| |||||||||||| |||| |
|
|
| T |
20837169 |
tgtcctgtttcgtataatcttctaaaccatcatagct |
20837133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 57 - 293
Target Start/End: Complemental strand, 20811014 - 20810778
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||||| |||||| | |||||| || |
|
|
| T |
20811014 |
tgaactttcaccagcaattgatcttcccatgtctctgagcaaatcgtgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgaga |
20810915 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
| ||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||||||||| |
|
|
| T |
20810914 |
atagatattccactataagcatgaagtccacacccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaata |
20810815 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagct |
293 |
Q |
| |
|
| | ||||| | ||| ||| |||||||||||| |||| |
|
|
| T |
20810814 |
tgtccttttgcgtataatcttctaaaccatcatagct |
20810778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 442
Target Start/End: Complemental strand, 3363162 - 3362742
Alignment:
| Q |
22 |
caccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttat |
121 |
Q |
| |
|
||||||||||| ||| | || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
3363162 |
caccacaatcgggtatgcttttcaggctcctccggtgaactttcacgaacaatttcccttcccatgtctcgtagcaaagcatgcattccaagctttttat |
3363063 |
T |
|
| Q |
122 |
tcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatc |
221 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
3363062 |
tcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcattaagtccacaaccatttagtatctttgtaacataagctctatc |
3362963 |
T |
|
| Q |
222 |
cttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatca |
321 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3362962 |
cttaccgataaagaaacagcagacatcaagaaatatattcttttccatacgatcctttaaaccatcaaagcttatttttagtatctcgtgtatttgatca |
3362863 |
T |
|
| Q |
322 |
ttgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccac |
421 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||| |||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3362862 |
ttgggtatcttttctagctttgataatacactccgccactcttgttttttcctcttgaacaagtaagatccaaggacttcaagagctagtggtattccac |
3362763 |
T |
|
| Q |
422 |
cacaataggaaactacatctc |
442 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
3362762 |
cacaataggcaactacatctc |
3362742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 439
Target Start/End: Original strand, 3392720 - 3393138
Alignment:
| Q |
21 |
acaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtta |
120 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| ||| |
|
|
| T |
3392720 |
acaccacaatcgggtacgcttctcaggctcctccggtgaactttcacgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagcttttta |
3392819 |
T |
|
| Q |
121 |
ttcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctat |
220 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3392820 |
ttcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcatgaagtccacaaccatttagtatctttgtaacataagctctat |
3392919 |
T |
|
| Q |
221 |
ccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatc |
320 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
3392920 |
ccttgccgataaagaaacaacagacatcaagaaatatatccttttccatacgatcgcttaaaccattaaagctaatttttagtttctcatgtatttgatc |
3393019 |
T |
|
| Q |
321 |
attgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtcca |
420 |
Q |
| |
|
||||||||| |||| ||||| |||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3393020 |
attgggtattttttcaagctttgataatacactctgccactcttgttttctcctcttcaataagtaagatccaaggacttcaagagctagtggtattcca |
3393119 |
T |
|
| Q |
421 |
ccacaataggaaactacat |
439 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
3393120 |
ccacaataggcaactacat |
3393138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 23 - 492
Target Start/End: Complemental strand, 3313791 - 3313322
Alignment:
| Q |
23 |
accacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttatt |
122 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||||||||| |||||||||| |||||||||||| || | | ||||||||||||||||||||| |
|
|
| T |
3313791 |
accacaatcgactacgcttttcaggctcctcaggtgaactttcacggacaatttctcgtcccatgtctcgcagtaaatcatgcattccaagcttgttata |
3313692 |
T |
|
| Q |
123 |
cttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatcc |
222 |
Q |
| |
|
|||||||| ||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
3313691 |
cttttcaatttttattaggcttcgctcaatcagcactgttattccaatatcagcatgaagtccacaaccatttagtatatttgtgacatatgctctatcc |
3313592 |
T |
|
| Q |
223 |
ttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcat |
322 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3313591 |
ttaccgataaagaaacaacacacatcaagaaatatatccttttccatatgatcccttaaaccgtcaaagcttatttttagtttctcatgtatttgatcat |
3313492 |
T |
|
| Q |
323 |
tgggtatcttttgtagcttggatattacactctgccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccacc |
422 |
Q |
| |
|
| |||||||||| |||||| |||| |||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3313491 |
taggtatcttttctagctttgataatacactctgccactcttgttttctcctcttgaacaagtaagatccaaggacttcaagagctagtggcagtccacc |
3313392 |
T |
|
| Q |
423 |
acaataggaaactacatctccggagagtatgaggaaagcttcacttggattcgcctccttaaacgcatgc |
492 |
Q |
| |
|
|||||||| |||||||| || || || || |||||| |||| ||||| | | |||| ||||||||||| |
|
|
| T |
3313391 |
acaataggcaactacatatcttgaaagaataaggaaaccttctattggacttgtctccctaaacgcatgc |
3313322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 57 - 428
Target Start/End: Original strand, 3408490 - 3408861
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || | | ||||||||||||||||||||||||| ||||||||||||||||| | ||||| || |
|
|
| T |
3408490 |
tgaactttcacggacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttctcaacttttaggaggctccggtctatgagg |
3408589 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| || || |||||||| |||||||||||||| | |||||||||| |
|
|
| T |
3408590 |
accgctattccaatatcagcataaagtccacagccatttagtatctctgtaacataggccctgtccttaccaataaagaaacaacaaatgtcaagaaata |
3408689 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacactctg |
356 |
Q |
| |
|
||| |||| |||||| ||||| |||||||||| |||||||| | || |||||||| | |||||||||||| || | | || ||| |||| ||| || |
|
|
| T |
3408690 |
tatcctttaccatatcatcctttaaaccatcatagcttattctcagcttctcgtgcacttgatcattgggaattctctctaactttgatagtacgcttat |
3408789 |
T |
|
| Q |
357 |
ccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaata |
428 |
Q |
| |
|
||| ||| ||||| |||| | |||||||| |||||||||||||||||||| ||||||| || |||||||| |
|
|
| T |
3408790 |
ccattcttgttttgtcctctcaaataagtaggatccaaggacttcaagagccagtggtaaccctccacaata |
3408861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 57 - 437
Target Start/End: Original strand, 7165837 - 7166217
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| | ||||| | ||||| || |
|
|
| T |
7165837 |
tgaactttggcgaacaatttctcttcccatgtctctaagcaaatcatgcattccaagcttgttattcttttcaattttcacaaggctccgctctacgagg |
7165936 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| ||||||||| ||||||| ||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||| | ||||||||||| |
|
|
| T |
7165937 |
accgttattccaatgtcagcataaagtccacaaccatttagtatctcagtaacataggctctatccttgccgataaagaaacaacatatatcaagaaata |
7166036 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatattacactctg |
356 |
Q |
| |
|
||| |||| |||||| ||||| |||||| ||| |||||||| | |||||||| || | |||||||||||| || | | || || | | |||||| | |
|
|
| T |
7166037 |
tatcctttgccatatcatcctttaaaccgtcatagcttattctcagtttctcttgcacttgatcattgggaattctctctaatttcaagagtacactttc |
7166136 |
T |
|
| Q |
357 |
ccactctcgttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactac |
437 |
Q |
| |
|
||| ||| ||||| |||| | |||||||||| || | |||||||||||| ||||||| ||| |||||||||| |||||| |
|
|
| T |
7166137 |
ccattcttgttttgtcctcccgtataagtaagaaccgatgacttcaagagccagtggtaatcctccacaataggcaactac |
7166217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 58 - 326
Target Start/End: Original strand, 3326154 - 3326422
Alignment:
| Q |
58 |
gaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagca |
157 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||||||||||| ||||| ||||| | |||||| || | |
|
|
| T |
3326154 |
gaactttcacgaataatttctcttcccatgtctcttatcaaacaatgcattccaagcttgttattcttttcaatttttacaaggctccgctctatgagaa |
3326253 |
T |
|
| Q |
158 |
cttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatat |
257 |
Q |
| |
|
| ||||||||||| |||| ||||||||| |||||||||||||||||||| | ||||||||||| || |||||||||||||| | ||||||||||| |
|
|
| T |
3326254 |
cacttattccaatatttgcataaagtccacagccatttagtatctctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaatat |
3326353 |
T |
|
| Q |
258 |
attcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg |
326 |
Q |
| |
|
|| |||||||||| ||||| ||||||||| |||| ||| | |||||||| || | |||||||||||| |
|
|
| T |
3326354 |
atctttttccatatcatcctttaaaccatcgtagctaattctcagtttctcttgcacttgatcattggg |
3326422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 329
Target Start/End: Original strand, 3268362 - 3268668
Alignment:
| Q |
23 |
accacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttatt |
122 |
Q |
| |
|
||||||||||| |||| ||| ||||||| | ||| |||| ||||||||| |||||||||||||||| ||||| | |||||||||||| |||||| | |
|
|
| T |
3268362 |
accacaatcgactacgcttcccaggctcttttattgatcttttacgaacaatctctcttcccatgtctcttagcaaactatgcattccaagtttgttact |
3268461 |
T |
|
| Q |
123 |
cttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatcc |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || || |||||||||| |||||| || |||| |||| || ||||||| |||||| ||||| ||| |
|
|
| T |
3268462 |
cttttcaatttttaggaggcttctctctatgaggacagttattccaataccagcataaaagtcacaaccatctataatctctgaaacatatgctctgtcc |
3268561 |
T |
|
| Q |
223 |
ttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcat |
322 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||| |||||| ||| || || |||||||||| |||||||| |||||||||| || | || ||||| |
|
|
| T |
3268562 |
ttaccaataaagaaacaacatatgtcaagaaatatatccttttctgtatcattctttaaaccatcatagcttattcttagtttctcatgcactttatcat |
3268661 |
T |
|
| Q |
323 |
tgggtat |
329 |
Q |
| |
|
|||||| |
|
|
| T |
3268662 |
cgggtat |
3268668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 3287625 - 3287894
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | | |||||||| |||||||||||| || ||||||||||||||||| | ||||| || |
|
|
| T |
3287625 |
tgaactttcacgaacaatttctcttcccatatctcttattaaatcatgcatttcaagcttgttataattgtcaacttttaggaggctccgctctacgagg |
3287724 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
||| ||||||| | ||||||| ||||||||| ||||||||||||||||| ||||| | ||| |||||||| |||||||||||||| | |||||||||| |
|
|
| T |
3287725 |
actgttattccagtgtcagcatcaagtccacagccatttagtatctctgtgacataggttctgtccttaccaataaagaaacaacaaatgtcaagaaata |
3287824 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg |
326 |
Q |
| |
|
||| ||||||||||| | | ||| |||||| |||||||| | ||||| || || ||||||| |||||| |
|
|
| T |
3287825 |
tatccttttccatatcttgatttaacccatcatagcttattctcagtttttcttggatttgatgattggg |
3287894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 57 - 326
Target Start/End: Original strand, 3263698 - 3263967
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || | | |||||||||||| |||||||||||||| | ||||| ||||| | ||||| || |
|
|
| T |
3263698 |
tgaactttcacaaacaatttctcttcccatgtctcttattaaatcatgcattccaattttgttattcttttccatttttacaaggctccgttctatgagg |
3263797 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
| ||||||||||| |||||||||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||||||||| | |||||||||| |
|
|
| T |
3263798 |
atcgctattccaataacagcatgaagtccacagccattaagtatctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtcaagaaata |
3263897 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg |
326 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| | |||||| | || ||||| || | |||||||||||| |
|
|
| T |
3263898 |
tatccttttccataccatcctttaaaccatcgtaacttattctcagcttctcttgcacttgatcattggg |
3263967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 57 - 257
Target Start/End: Original strand, 3399790 - 3399990
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||| | |||||| || |
|
|
| T |
3399790 |
tgaactttcaccagcaattgctcttcccatgtctctgagcaaatcatgcattccaagcttgttattcttttcgacttttaggaggctgcgctctatgaga |
3399889 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||||||||| |
|
|
| T |
3399890 |
atagatattccaatatcagcatgaagtccacatgcattaagtatctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtcaagaaata |
3399989 |
T |
|
| Q |
257 |
t |
257 |
Q |
| |
|
| |
|
|
| T |
3399990 |
t |
3399990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 57 - 299
Target Start/End: Complemental strand, 13786545 - 13786303
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||| | |||||||||| |||||| | |||||| || |
|
|
| T |
13786545 |
tgaactttcacgaacaatttctcttcccatgtctcttattaacttatgcattccaagggtgttattgtcctcaacttttaagaggctccgctctatgagg |
13786446 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||| ||| |||||||||||||| | |||||||||| |
|
|
| T |
13786445 |
acagctattccaatatcagcacaaagtccacagccatttagtatctctgtaacataggctttgtcctcaccaataaagaaacaacatatgtcaagaaata |
13786346 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagcttatttt |
299 |
Q |
| |
|
| |||| |||||| |||| |||||||||| | |||||||| |
|
|
| T |
13786345 |
cagcctttaccatatcatccattaaaccatcataacttatttt |
13786303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 69 - 266
Target Start/End: Complemental strand, 31174746 - 31174549
Alignment:
| Q |
69 |
aacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattcca |
168 |
Q |
| |
|
||||||| ||||||||||||||| |||| | |||||||| |||||||||||| || |||||||||| |||||| | ||| || || || |||||||| |
|
|
| T |
31174746 |
aacaattgctcttcccatgtctctgagcaaatcatgcatttgaagcttgttatttttatcaacttttatgaggctgcgctcaatgaggacaactattcca |
31174647 |
T |
|
| Q |
169 |
atatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttc |
266 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||||||| |||||| | ||| || || ||||||||||| | ||||||||||||| |||||| |
|
|
| T |
31174646 |
atatcagcatgaagcccacagccattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttc |
31174549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 13807838 - 13807603
Alignment:
| Q |
23 |
accacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttatt |
122 |
Q |
| |
|
||||||||||| |||| ||| || ||||||| ||| |||| || |||||| |||||||||||||||||||| | | ||||||||||||| || | ||| |
|
|
| T |
13807838 |
accacaatcgactacgcttcccaagctcctcttctgatcttttacaaacaatctctcttcccatgtctcgtagtaaaccatgcattccaagtttatcatt |
13807739 |
T |
|
| Q |
123 |
cttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatcc |
222 |
Q |
| |
|
|||||| |||||||| ||||| | |||||| || | |||||| |||||||||| ||||||||| |||| ||| ||||||| |||||| ||||| | | |
|
|
| T |
13807738 |
cttttcgacttttagaaggctccgctctatgaggatagttattcccatatcagcattaagtccacaaccatctagaatctctgaaacataggctctcttc |
13807639 |
T |
|
| Q |
223 |
ttaccgataaagaaacaacagacatcaagaaatata |
258 |
Q |
| |
|
|| ||||||||||||||||| | |||||||||||| |
|
|
| T |
13807638 |
tttccgataaagaaacaacaaatgtcaagaaatata |
13807603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 428
Target Start/End: Complemental strand, 13807496 - 13807433
Alignment:
| Q |
365 |
gttttctcctattgaataagtaagatccaaggacttcaagagctagtggtagtccaccacaata |
428 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
13807496 |
gttttgtcctatcaaataagtaagatccaatttcttcaagagctagtggtaatcctccacaata |
13807433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 3287951 - 3288005
Alignment:
| Q |
383 |
agtaagatccaaggacttcaagagctagtggtagtccaccacaataggaaactac |
437 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
3287951 |
agtaagaaccaatgacttctagagctagtggtaatcctccacaataagaaactac |
3288005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 32412133 - 32412399
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||| ||||||| |||| || |
|
|
| T |
32412133 |
tgaactctgacggacaatttctcttcccatgtctcttagcagatcatgcattccaagtttgttattcttttcaatttttacaaggcttcgttctacgaga |
32412232 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| ||||||||| ||||||| |||||||| |||||||||||||| |||||||| || || ||||| |||||||||||| |||| | |||||||||| |
|
|
| T |
32412233 |
accgttattccaatgtcagcataaagtccacgcccatttagtatcttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaata |
32412332 |
T |
|
| Q |
257 |
tattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcatt |
323 |
Q |
| |
|
||| ||||||||||| ||||| |||||| ||| |||||||| |||||||||| |||| ||| ||||| |
|
|
| T |
32412333 |
tatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtacttggtcatt |
32412399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 6907020 - 6907221
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || | | |||||||||||||||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
6907020 |
tgaacttccacgaacaatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcaacttttaaaaggctcctctctatgagg |
6907119 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| ||||||| ||| ||||| ||||||||| || ||||||||||| |||||||| |||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6907120 |
acagctattcctataccagcaaaaagtccacaaccgtttagtatctcggtaacatagtctctgtccttgccgataaagaaacaacatacatcaagaaata |
6907219 |
T |
|
| Q |
257 |
ta |
258 |
Q |
| |
|
|| |
|
|
| T |
6907220 |
ta |
6907221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 258
Target Start/End: Original strand, 7426 - 7627
Alignment:
| Q |
57 |
tgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagc |
156 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||| || | | |||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |
|
|
| T |
7426 |
tgaacttccgcgaactatttctcttcccatgtctcttattaaatcatgcattccaagcttgttattcttttcgacttttagaaggctcctctctatgagg |
7525 |
T |
|
| Q |
157 |
acttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaata |
256 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| |||||||||||||| |||||||| || | ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
7526 |
acagctattccaatatcagcaaaaagtccacaaccatttagtatctcggtaacatagtctttgtccttgccgataaagaaacaacatacatcaagaaata |
7625 |
T |
|
| Q |
257 |
ta |
258 |
Q |
| |
|
|| |
|
|
| T |
7626 |
ta |
7627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 14768056 - 14768317
Alignment:
| Q |
26 |
acaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgttattctt |
125 |
Q |
| |
|
|||||||| |||| || ||||||| | |||||||||| ||| |||||||||||||||||||| | || || | |||||||| ||||||||||||||| |
|
|
| T |
14768056 |
acaatcgactacgctttccaggctcttttggtgaactttgacggacaatttctcttcccatgtcccatatcaaatcatgcatttgaagcttgttattctt |
14768155 |
T |
|
| Q |
126 |
ttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaac-ataagctctatcctt |
224 |
Q |
| |
|
| ||||||||| |||||| | ||||| || || ||||||||||||||||| ||||||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
14768156 |
tacaacttttaagaggctccgttctatgaggacagatattccaatatcagcataaagtccacatccatttaatatctctgtaacgttaggctctatcctt |
14768255 |
T |
|
| Q |
225 |
accgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccat |
286 |
Q |
| |
|
|| ||||||||| |||| | ||||||||||||| ||||| | || |||||||||||||| |
|
|
| T |
14768256 |
gccaataaagaaaaaacatatgtcaagaaatatatccttttttaaatcatcctctaaaccat |
14768317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 8372864 - 8373136
Alignment:
| Q |
21 |
acaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtta |
120 |
Q |
| |
|
||||||||||||| || | || |||||||| | | ||||||||| | || ||| ||||||||||||| ||||| | | ||||||| || ||||||| |
|
|
| T |
8372864 |
acaccacaatcgactatgcttttcaggctcttttgctgaactttcgctgacgattgctcttcccatgtcgcgtagtaaatcatgcatctgaaacttgtta |
8372963 |
T |
|
| Q |
121 |
ttcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctat |
220 |
Q |
| |
|
||||| |||||||||| |||||| | |||||| || || || |||||||||||||||||||||||| ||||| || |||||||| |||| | |||| | |
|
|
| T |
8372964 |
ttcttatcaacttttatgaggctacgctctataagaacagatactccaatatcagcatgaagtccacaaccattaaggatctctgtgacatcaactctgt |
8373063 |
T |
|
| Q |
221 |
ccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct |
293 |
Q |
| |
|
||| || || ||||||||||| | ||||||||||||| |||||| ||| ||| |||||||||||| |||| |
|
|
| T |
8373064 |
tctttccaatgaagaaacaacatatgtcaagaaatatatccttttctgtataatcttctaaaccatcatagct |
8373136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 8373223 - 8373258
Alignment:
| Q |
380 |
ataagtaagatccaaggacttcaagagctagtggta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8373223 |
ataagtaagatccaaggacttcaagagctagtggta |
8373258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 31060156 - 31060258
Alignment:
| Q |
191 |
catttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaa |
290 |
Q |
| |
|
|||| |||||||||||||||| |||||| | ||| || || ||||||||||| | |||| |||||||| |||| ||||| ||| ||||||||||| || |
|
|
| T |
31060156 |
cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaaaaaatatatcctttaacatataatcttctaaaccatcgaa |
31060255 |
T |
|
| Q |
291 |
gct |
293 |
Q |
| |
|
||| |
|
|
| T |
31060256 |
gct |
31060258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 5261431 - 5261486
Alignment:
| Q |
64 |
tcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||| | || | |||||||||||||| |||| |
|
|
| T |
5261431 |
tcacgaacaatttctcttcccatatctcgcaacaaaccatgcattccaagcatgtt |
5261486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 5285430 - 5285485
Alignment:
| Q |
64 |
tcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
|||||||||||| |||||||||| ||||| |||| | |||||||||||||| |||| |
|
|
| T |
5285430 |
tcacgaacaattcctcttcccatatctcgcagcaaaccatgcattccaagcatgtt |
5285485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 5075014 - 5075071
Alignment:
| Q |
62 |
tttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
||||||||| |||||||||||||| || || |||| | ||||||||||||||||||| |
|
|
| T |
5075014 |
tttcacgaatgatttctcttcccatatcacgcagcaaatcatgcattccaagcttgtt |
5075071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 5355879 - 5355951
Alignment:
| Q |
42 |
ctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagc |
114 |
Q |
| |
|
|||||| ||||| ||||| | |||||||| | |||||||||||| |||||||||| | ||||||||| |||| |
|
|
| T |
5355879 |
ctcagggtcctccggtgatttctcacgaacgacttctcttcccatatctcgtagcaaatcatgcattctaagc |
5355951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 5645 - 5693
Alignment:
| Q |
76 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattct |
124 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
5645 |
tctcttgccatggcttgtagcagaacatgcattccaagcttgttattct |
5693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 4351975 - 4351891
Alignment:
| Q |
35 |
tacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
|||||| ||||||||||| ||||| | ||||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4351975 |
tacgttcctcaggctcctttggtgatttctcacgaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtt |
4351891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 6792984 - 6792936
Alignment:
| Q |
76 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgttattct |
124 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
6792984 |
tctcttgccatggcttgtagcagaacatgcattccaagcttgttattct |
6792936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 4135079 - 4135122
Alignment:
| Q |
76 |
tctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
4135079 |
tctcttcccatatctcgtagcaaatcatgcattccaagcttgtt |
4135122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 4359149 - 4359072
Alignment:
| Q |
42 |
ctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4359149 |
ctcaggctcctttggtgatttctcacgaatgatttctcttcccatatctcggagcaaatcatgcatgccaagcttgtt |
4359072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 4125696 - 4125780
Alignment:
| Q |
35 |
tacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4125696 |
tacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtt |
4125780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 4334298 - 4334214
Alignment:
| Q |
35 |
tacgtttctcaggctcctcaggtgaactttcacgaacaatttctcttcccatgtctcgtagcagagcatgcattccaagcttgtt |
119 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||| |||||||||||||| ||||| |||| | ||||||| ||||||||||| |
|
|
| T |
4334298 |
tacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt |
4334214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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